Gm56986 Gene Detail

Summary

• Symbol
  Gm56986
• Name
  predicted gene, 56986

• Feature Type
  lncRNA gene
• IDs
  MGI:7337885
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:119365814-119382601 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  480 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337885	lncRNA gene	Chr6:119365814-119382601 (+)
129S1/SvImJ	ENSMUSG00200051942	lncRNA gene	Chr6:116564854-116567274 (+)
A/J	ENSMUSG00195048244	lncRNA gene	Chr6:115975684-115978104 (+)
AKR/J	ENSMUSG00220033288	lncRNA gene	Chr6:114852103-114854524 (+)
BALB/cJ	ENSMUSG00180049738	lncRNA gene	Chr6:116343367-116345788 (+)
C3H/HeJ	ENSMUSG00175036250	lncRNA gene	Chr6:61124402-61126823 (-)
C57BL/6NJ	ENSMUSG00215049414	lncRNA gene	Chr6:116332307-116334727 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051448	lncRNA gene	Chr6:116147307-116149726 (+)
CBA/J	ENSMUSG00210045516	lncRNA gene	Chr6:116110497-116112917 (+)
DBA/2J	ENSMUSG00185049554	lncRNA gene	Chr6:116762942-116765363 (+)
FVB/NJ	ENSMUSG00205052069	lncRNA gene	Chr6:115209466-115211885 (+)
JF1/MsJ	ENSUMUG00000054730	lncRNA gene	Chr6:115341225-115343644 (+)
LP/J	ENSMUSG00230049285	lncRNA gene	Chr6:117962358-117964778 (+)
NOD/ShiLtJ	ENSMUSG00190050598	lncRNA gene	Chr6:115723438-115725858 (+)
NZO/HlLtJ	ENSMUSG00225047675	lncRNA gene	Chr6:119853316-119855734 (+)
PWK/PhJ	ENSLUMG00010050386	lncRNA gene	Chr6:114705354-114707764 (+)
SPRET/EiJ	ENSMSPG00010045899	lncRNA gene	Chr6:117582120-117584522 (+)
WSB/EiJ	ENSIUOG00005045286	lncRNA gene	Chr6:116383156-116385574 (+)

Homology

• Gene Tree
  Gm56986
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121153 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121153	Ensembl Gene Model | MGI Sequence Detail	16788	C57BL/6J
transcript	ENSMUST00000247319	Ensembl | MGI Sequence Detail	2420	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56986:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58500	Chr6:119365833-119365849 (+)	27 bp
Tssr58501	Chr6:119365851-119365881 (+)	52 bp