Gm56985 Gene Detail

Summary

• Symbol
  Gm56985
• Name
  predicted gene, 56985

• Feature Type
  lncRNA gene
• IDs
  MGI:7337883
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:79506890-79507324 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337883	lncRNA gene	Chr10:79506890-79507324 (-)
129S1/SvImJ	ENSMUSG00200050911	lncRNA gene	Chr10:76130752-76130988 (-)
A/J	ENSMUSG00195050287	lncRNA gene	Chr10:76526253-76526489 (-)
AKR/J	ENSMUSG00220049638	lncRNA gene	Chr10:76123828-76124064 (-)
BALB/cJ	ENSMUSG00180053317	lncRNA gene	Chr10:76536754-76536990 (-)
C3H/HeJ	ENSMUSG00175052504	lncRNA gene	Chr10:76407454-76407690 (-)
C57BL/6NJ	ENSMUSG00215053395	lncRNA gene	Chr10:76149130-76149366 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052225	lncRNA gene	Chr10:76033605-76033841 (-)
CBA/J	ENSMUSG00210050010	lncRNA gene	Chr10:76263540-76263776 (-)
DBA/2J	ENSMUSG00185053374	lncRNA gene	Chr10:76605913-76606149 (-)
FVB/NJ	ENSMUSG00205051856	lncRNA gene	Chr10:76318700-76318936 (-)
JF1/MsJ	ENSUMUG00000055915	lncRNA gene	Chr10:77836463-77836696 (-)
LP/J	ENSMUSG00230051484	lncRNA gene	Chr10:78375687-78375923 (-)
NOD/ShiLtJ	ENSMUSG00190052296	lncRNA gene	Chr10:76519750-76519986 (-)
NZO/HlLtJ	ENSMUSG00225052862	lncRNA gene	Chr10:82662150-82662386 (-)
PWK/PhJ	ENSLUMG00010051584	lncRNA gene	Chr10:76195840-76196073 (-)
SPRET/EiJ	ENSMSPG00010047973	lncRNA gene	Chr10:77815057-77815293 (-)
WSB/EiJ	ENSIUOG00005051256	lncRNA gene	Chr10:76223310-76223546 (-)

Homology

• Gene Tree
  Gm56985
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120698 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120698	Ensembl Gene Model | MGI Sequence Detail	435	C57BL/6J
transcript	ENSMUST00000245283	Ensembl | MGI Sequence Detail	435	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56985:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98336	Chr10:79507305-79507323 (-)	10 bp