Gm56984 Gene Detail

Summary

• Symbol
  Gm56984
• Name
  predicted gene, 56984

• Feature Type
  lncRNA gene
• IDs
  MGI:7337881
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:58724837-58757596 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  649 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337881	lncRNA gene	Chr6:58724837-58757596 (-)
129S1/SvImJ	ENSMUSG00200006330	lncRNA gene	Chr6:55683950-55716712 (-)
A/J	ENSMUSG00195033704	lncRNA gene	Chr6:55383088-55415848 (-)
AKR/J	ENSMUSG00220006058	lncRNA gene	Chr6:54847523-54880289 (-)
BALB/cJ	ENSMUSG00180010167	lncRNA gene	Chr6:55739558-55772319 (-)
C3H/HeJ	ENSMUSG00175040520	lncRNA gene	Chr6:55425472-55458227 (-)
C57BL/6NJ	ENSMUSG00215030252	lncRNA gene	Chr6:55717893-55750654 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040602	lncRNA gene	Chr6:54920183-54959822 (-)
CBA/J	ENSMUSG00210033837	lncRNA gene	Chr6:55538116-55570880 (-)
DBA/2J	ENSMUSG00185020405	lncRNA gene	Chr6:56120457-56153216 (-)
FVB/NJ	ENSMUSG00205031772	lncRNA gene	Chr6:55609070-55641832 (-)
JF1/MsJ	ENSUMUG00000036552	lncRNA gene	Chr6:55544679-55584543 (-)
LP/J	ENSMUSG00230014336	lncRNA gene	Chr6:57240685-57273444 (-)
NOD/ShiLtJ	ENSMUSG00190009124	lncRNA gene	Chr6:55381999-55414760 (-)
NZO/HlLtJ	ENSMUSG00225013956	lncRNA gene	Chr6:59230011-59262770 (-)
PWK/PhJ	ENSLUMG00010018699	lncRNA gene	Chr6:55122984-55157439 (-)
SPRET/EiJ	ENSMSPG00010009353	lncRNA gene	Chr6:55912272-55947784 (-)
WSB/EiJ	ENSIUOG00005020894	lncRNA gene	Chr6:55718057-55750824 (-)

Homology

• Gene Tree
  Gm56984
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121138 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121138	Ensembl Gene Model | MGI Sequence Detail	32760	C57BL/6J
transcript	ENSMUST00000247258	Ensembl | MGI Sequence Detail	1927	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56984:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61171	Chr6:58757520-58757552 (-)	60 bp
Tssr61170	Chr6:58757496-58757511 (-)	92 bp