Gm56981 Gene Detail

Summary

• Symbol
  Gm56981
• Name
  predicted gene, 56981

• Feature Type
  lncRNA gene
• IDs
  MGI:7337875
• Alliance
  genome feature page
• Transcription Start Sites
  27 TSS

Location &
Maps

• Sequence Map
  Chr6:48995445-49050708 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1548 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337875	lncRNA gene	Chr6:48995445-49050708 (-)
129S1/SvImJ	ENSMUSG00200005628	lncRNA gene	Chr6:45955825-45956621 (-)
A/J	ENSMUSG00195007060	lncRNA gene	Chr6:45725810-45726606 (-)
AKR/J	ENSMUSG00220004687	lncRNA gene	Chr6:45435400-45436200 (-)
BALB/cJ	ENSMUSG00180027560	lncRNA gene	Chr6:46038830-46039630 (-)
C3H/HeJ	ENSMUSG00175018558	lncRNA gene	Chr6:45800419-45801219 (-)
C57BL/6NJ	ENSMUSG00215010258	lncRNA gene	Chr6:46000871-46001667 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005303	lncRNA gene	Chr6:45306703-45307498 (-)
CBA/J	ENSMUSG00210018636	lncRNA gene	Chr6:45845262-45846062 (-)
DBA/2J	ENSMUSG00185013812	lncRNA gene	Chr6:46426980-46427780 (-)
FVB/NJ	ENSMUSG00205032249	lncRNA gene	Chr6:46091456-46092256 (-)
JF1/MsJ	ENSUMUG00000013619	lncRNA gene	Chr6:45800877-45801673 (-)
LP/J	ENSMUSG00230019857	lncRNA gene	Chr6:47452893-47453689 (-)
NOD/ShiLtJ	ENSMUSG00190040352	lncRNA gene	Chr6:45765033-45765829 (-)
NZO/HlLtJ	ENSMUSG00225019454	lncRNA gene	Chr6:49489476-49490272 (-)
PWK/PhJ	ENSLUMG00010020960	lncRNA gene	Chr6:45425527-45426323 (-)
SPRET/EiJ	ENSMSPG00010010128	lncRNA gene	Chr6:46035201-46036013 (-)
WSB/EiJ	ENSIUOG00005029532	lncRNA gene	Chr6:46061685-46062481 (-)

Homology

• Gene Tree
  Gm56981
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000121098 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121098	Ensembl Gene Model | MGI Sequence Detail	55264	C57BL/6J
transcript	ENSMUST00000280302	Ensembl | MGI Sequence Detail	1132	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56981:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1841	Chr6:49050662-49050684 (-)	35 bp
Tssr60865	Chr6:49033711-49033715 (-)	16,995 bp
Tssr60864	Chr6:49028929-49028964 (-)	21,761 bp
Tssr60863	Chr6:49028046-49028062 (-)	22,654 bp
Tssr60862	Chr6:49028003-49028029 (-)	22,692 bp
Tssr60861	Chr6:49027447-49027451 (-)	23,259 bp
Tssr60860	Chr6:49027429-49027444 (-)	23,271 bp
Tssr60859	Chr6:49027415-49027425 (-)	23,288 bp
Tssr60858	Chr6:49027373-49027413 (-)	23,315 bp
Tssr60857	Chr6:49024960-49025042 (-)	25,707 bp
Tssr60856	Chr6:49024931-49024941 (-)	25,772 bp
Tssr60855	Chr6:49024893-49024914 (-)	25,804 bp
Tssr60854	Chr6:49024860-49024869 (-)	25,843 bp
Tssr60853	Chr6:49024841-49024852 (-)	25,861 bp
Tssr60852	Chr6:49024831-49024840 (-)	25,872 bp
Tssr60851	Chr6:49024788-49024811 (-)	25,908 bp
Tssr60850	Chr6:49024318-49024349 (-)	26,374 bp
Tssr60849	Chr6:49024263-49024296 (-)	26,428 bp
Tssr60848	Chr6:49023269-49023342 (-)	27,402 bp
Tssr60847	Chr6:49022372-49022409 (-)	28,317 bp
Tssr60846	Chr6:49022297-49022326 (-)	28,396 bp
Tssr60845	Chr6:49021029-49021083 (-)	29,652 bp
Tssr60844	Chr6:49019836-49019843 (-)	30,868 bp
Tssr60843	Chr6:49019812-49019825 (-)	30,889 bp
Tssr60842	Chr6:49019758-49019769 (-)	30,944 bp
Tssr60841	Chr6:49015308-49015313 (-)	35,397 bp
Tssr60840	Chr6:49013404-49013415 (-)	37,298 bp