Gm56980 Gene Detail

Summary

• Symbol
  Gm56980
• Name
  predicted gene, 56980

• Feature Type
  lncRNA gene
• IDs
  MGI:7337873
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:116050792-116074130 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  415 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337873	lncRNA gene	Chr6:116050792-116074130 (+)
129S1/SvImJ	ENSMUSG00200051986	lncRNA gene	Chr6:113262893-113286261 (+)
A/J	ENSMUSG00195049462	lncRNA gene	Chr6:112657303-112680644 (+)
AKR/J	ENSMUSG00220037845	lncRNA gene	Chr6:111562735-111586084 (+)
BALB/cJ	ENSMUSG00180049535	lncRNA gene	Chr6:113023697-113047034 (+)
C3H/HeJ	ENSMUSG00175036361	lncRNA gene	Chr6:64395030-64418380 (-)
C57BL/6NJ	ENSMUSG00215048274	lncRNA gene	Chr6:113009985-113033323 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051210	lncRNA gene	Chr6:112869098-112892469 (+)
CBA/J	ENSMUSG00210045682	lncRNA gene	Chr6:112819421-112842769 (+)
DBA/2J	ENSMUSG00185048974	lncRNA gene	Chr6:113461406-113484778 (+)
FVB/NJ	ENSMUSG00205027039	lncRNA gene	Chr6:111917578-111941000 (+)
JF1/MsJ	ENSUMUG00000030600	lncRNA gene	Chr6:112107817-112131171 (+)
LP/J	ENSMUSG00230049058	lncRNA gene	Chr6:114665717-114689082 (+)
NOD/ShiLtJ	ENSMUSG00190050560	lncRNA gene	Chr6:112415615-112438987 (+)
NZO/HlLtJ	ENSMUSG00225048149	lncRNA gene	Chr6:116521410-116544779 (+)
PWK/PhJ	ENSLUMG00010029439	lncRNA gene	Chr6:111424621-111447948 (+)
SPRET/EiJ	ENSMSPG00010046721	lncRNA gene	Chr6:114217643-114241412 (+)
WSB/EiJ	ENSIUOG00005045734	lncRNA gene	Chr6:113161123-113184442 (+)

Homology

• Gene Tree
  Gm56980
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121085 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121085	Ensembl Gene Model | MGI Sequence Detail	23339	C57BL/6J
transcript	ENSMUST00000247091	Ensembl | MGI Sequence Detail	321	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56980:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58350	Chr6:116050790-116050793 (+)	0 bp