Gm56978 Gene Detail

Summary

• Symbol
  Gm56978
• Name
  predicted gene, 56978

• Feature Type
  lncRNA gene
• IDs
  MGI:7337869
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:126932456-126943756 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  326 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337869	lncRNA gene	Chr6:126932456-126943756 (-)
129S1/SvImJ	ENSMUSG00200047495	lncRNA gene	Chr6:124015309-124017342 (-)
A/J	ENSMUSG00195032219	lncRNA gene	Chr6:123444141-123446188 (-)
AKR/J	ENSMUSG00220036295	lncRNA gene	Chr6:122305730-122307777 (-)
BALB/cJ	ENSMUSG00180038486	lncRNA gene	Chr6:123781134-123783181 (-)
C3H/HeJ	ENSMUSG00175044349	lncRNA gene	Chr6:123444846-123446893 (-)
C57BL/6NJ	ENSMUSG00215031202	lncRNA gene	Chr6:123771284-123773317 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041175	lncRNA gene	Chr6:123619080-123621128 (-)
CBA/J	ENSMUSG00210017290	lncRNA gene	Chr6:123481425-123483472 (-)
DBA/2J	ENSMUSG00185046557	lncRNA gene	Chr6:124181717-124183764 (-)
FVB/NJ	ENSMUSG00205037527	lncRNA gene	Chr6:123053200-123055247 (-)
JF1/MsJ	ENSUMUG00000055195	lncRNA gene	Chr6:122595964-122598000 (-)
LP/J	ENSMUSG00230045062	lncRNA gene	Chr6:125378907-125380954 (-)
NOD/ShiLtJ	ENSMUSG00190040588	lncRNA gene	Chr6:123157210-123159257 (-)
NZO/HlLtJ	ENSMUSG00225017123	lncRNA gene	Chr6:127412021-127414068 (-)
PWK/PhJ	ENSLUMG00010050897	lncRNA gene	Chr6:121847333-121849380 (-)
SPRET/EiJ	ENSMSPG00010042389	lncRNA gene	Chr6:124696875-124698923 (-)
WSB/EiJ	ENSIUOG00005047498	lncRNA gene	Chr6:123867489-123869537 (-)

Homology

• Gene Tree
  Gm56978
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121058 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121058	Ensembl Gene Model | MGI Sequence Detail	11301	C57BL/6J
transcript	ENSMUST00000298059	Ensembl | MGI Sequence Detail	1874	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56978:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63353	Chr6:126943745-126943757 (-)	5 bp