Gm56977 Gene Detail

Summary

• Symbol
  Gm56977
• Name
  predicted gene, 56977

• Feature Type
  lncRNA gene
• IDs
  MGI:7337867
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:83092006-83092464 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337867	lncRNA gene	Chr6:83092006-83092464 (-)
129S1/SvImJ	ENSMUSG00200012396	lncRNA gene	Chr6:80061482-80061923 (-)
A/J	ENSMUSG00195012459	lncRNA gene	Chr6:79738410-79738877 (-)
AKR/J	ENSMUSG00220002223	lncRNA gene	Chr6:78681819-78682290 (-)
BALB/cJ	ENSMUSG00180010597	lncRNA gene	Chr6:80114416-80114883 (-)
C3H/HeJ	ENSMUSG00175038864	lncRNA gene	Chr6:97295473-97295920 (+)
C57BL/6NJ	ENSMUSG00215014725	lncRNA gene	Chr6:80111599-80112046 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008389	lncRNA gene	Chr6:80124613-80125096 (-)
CBA/J	ENSMUSG00210011456	lncRNA gene	Chr6:79929971-79930418 (-)
DBA/2J	ENSMUSG00185001169	lncRNA gene	Chr6:80477033-80477480 (-)
FVB/NJ	ENSMUSG00205030022	lncRNA gene	Chr6:79156103-79156570 (-)
JF1/MsJ	ENSUMUG00000024255	lncRNA gene	Chr6:79530154-79530589 (-)
LP/J	ENSMUSG00230050740	lncRNA gene	Chr6:81618734-81619175 (-)
NOD/ShiLtJ	ENSMUSG00190001889	lncRNA gene	Chr6:79559223-79559690 (-)
NZO/HlLtJ	ENSMUSG00225020738	lncRNA gene	Chr6:83526732-83527167 (-)
PWK/PhJ	ENSLUMG00010006472	lncRNA gene	Chr6:78881032-78881467 (-)
SPRET/EiJ	ENSMSPG00010042449	lncRNA gene	Chr6:81034790-81035212 (-)
WSB/EiJ	ENSIUOG00005018633	lncRNA gene	Chr6:80496969-80497432 (-)

Homology

• Gene Tree
  Gm56977
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm56977
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121056 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121056	Ensembl Gene Model | MGI Sequence Detail	459	C57BL/6J
transcript	ENSMUST00000247019	Ensembl | MGI Sequence Detail	459	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm56977:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61620	Chr6:83092393-83092457 (-)	39 bp
Tssr61619	Chr6:83092370-83092378 (-)	90 bp