Gm56974 Gene Detail

Summary

• Symbol
  Gm56974
• Name
  predicted gene, 56974

• Feature Type
  lncRNA gene
• IDs
  MGI:7337861
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:82979797-82998397 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337861	lncRNA gene	Chr6:82979797-82998397 (-)
129S1/SvImJ	ENSMUSG00200012348	lncRNA gene	Chr6:79941847-79943676 (-)
A/J	ENSMUSG00195012303	lncRNA gene	Chr6:79625997-79627827 (-)
AKR/J	ENSMUSG00220002212	lncRNA gene	Chr6:78569421-78571251 (-)
BALB/cJ	ENSMUSG00180010213	lncRNA gene	Chr6:80002005-80003835 (-)
C3H/HeJ	ENSMUSG00175038706	lncRNA gene	Chr6:97406077-97408225 (+)
C57BL/6NJ	ENSMUSG00215016116	lncRNA gene	Chr6:79999271-80001419 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008372	lncRNA gene	Chr6:80012524-80014671 (-)
CBA/J	ENSMUSG00210011415	lncRNA gene	Chr6:79817661-79819809 (-)
DBA/2J	ENSMUSG00185001088	lncRNA gene	Chr6:80364711-80366859 (-)
FVB/NJ	ENSMUSG00205028555	lncRNA gene	Chr6:79043709-79045539 (-)
JF1/MsJ	ENSUMUG00000024029	lncRNA gene	Chr6:79418135-79420282 (-)
LP/J	ENSMUSG00230050765	lncRNA gene	Chr6:81499121-81500950 (-)
NOD/ShiLtJ	ENSMUSG00190001658	lncRNA gene	Chr6:79446876-79448706 (-)
NZO/HlLtJ	ENSMUSG00225021535	lncRNA gene	Chr6:83414778-83416925 (-)
PWK/PhJ	ENSLUMG00010006324	lncRNA gene	Chr6:78768962-78771110 (-)
SPRET/EiJ	ENSMSPG00010042315	lncRNA gene	Chr6:80922882-80925074 (-)
WSB/EiJ	ENSIUOG00005019524	lncRNA gene	Chr6:80384623-80386453 (-)

Homology

• Gene Tree
  Gm56974
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm56974
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000121008 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121008	Ensembl Gene Model | MGI Sequence Detail	18601	C57BL/6J
transcript	ENSMUST00000246847	Ensembl | MGI Sequence Detail	2149	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48