Gm56973 Gene Detail

Summary

• Symbol
  Gm56973
• Name
  predicted gene, 56973

• Feature Type
  lncRNA gene
• IDs
  MGI:7337859
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:54217773-54218928 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337859	lncRNA gene	Chr6:54217773-54218928 (-)
129S1/SvImJ	ENSMUSG00200006152	lncRNA gene	Chr6:51194700-51195818 (-)
A/J	ENSMUSG00195033753	lncRNA gene	Chr6:50931745-50932863 (-)
AKR/J	ENSMUSG00220004771	lncRNA gene	Chr6:50628201-50629319 (-)
BALB/cJ	ENSMUSG00180010626	lncRNA gene	Chr6:51225728-51226846 (-)
C3H/HeJ	ENSMUSG00175040598	lncRNA gene	Chr6:50986964-50988082 (-)
C57BL/6NJ	ENSMUSG00215026487	lncRNA gene	Chr6:51202028-51203146 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005238	lncRNA gene	Chr6:50468401-50469518 (-)
CBA/J	ENSMUSG00210034705	lncRNA gene	Chr6:51031269-51032387 (-)
DBA/2J	ENSMUSG00185019721	lncRNA gene	Chr6:51610903-51612021 (-)
FVB/NJ	ENSMUSG00205030276	lncRNA gene	Chr6:51260763-51261881 (-)
JF1/MsJ	ENSUMUG00000035327	lncRNA gene	Chr6:50984062-50985172 (-)
LP/J	ENSMUSG00230013758	lncRNA gene	Chr6:52691788-52692906 (-)
NOD/ShiLtJ	ENSMUSG00190008844	lncRNA gene	Chr6:50942469-50943587 (-)
NZO/HlLtJ	ENSMUSG00225013733	lncRNA gene	Chr6:54675454-54676572 (-)
PWK/PhJ	ENSLUMG00010023243	lncRNA gene	Chr6:50732314-50733424 (-)
SPRET/EiJ	ENSMSPG00010009102	lncRNA gene	Chr6:51332227-51333344 (-)
WSB/EiJ	ENSIUOG00005021225	lncRNA gene	Chr6:51279128-51280246 (-)

Homology

• Gene Tree
  Gm56973
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121002 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121002	Ensembl Gene Model | MGI Sequence Detail	1156	C57BL/6J
transcript	ENSMUST00000367247	Ensembl | MGI Sequence Detail	1136	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56973:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61071	Chr6:54218878-54218897 (-)	40 bp