Gm56972 Gene Detail

Summary

• Symbol
  Gm56972
• Name
  predicted gene, 56972

• Feature Type
  lncRNA gene
• IDs
  MGI:7337857
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:96207089-96211031 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337857	lncRNA gene	Chr10:96207089-96211031 (+)
129S1/SvImJ	ENSMUSG00200020603	lncRNA gene	Chr10:92717765-92718591 (+)
A/J	ENSMUSG00195017101	lncRNA gene	Chr10:93149214-93150040 (+)
AKR/J	ENSMUSG00220026467	lncRNA gene	Chr10:92710886-92711712 (+)
BALB/cJ	ENSMUSG00180009465	lncRNA gene	Chr10:93157252-93158078 (+)
C3H/HeJ	ENSMUSG00175006079	lncRNA gene	Chr10:93050952-93051778 (+)
C57BL/6NJ	ENSMUSG00215007313	lncRNA gene	Chr10:92738764-92739590 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005772	lncRNA gene	Chr10:92444462-92445053 (+)
CBA/J	ENSMUSG00210022982	lncRNA gene	Chr10:92882138-92882964 (+)
DBA/2J	ENSMUSG00185018815	lncRNA gene	Chr10:93099359-93100185 (+)
FVB/NJ	ENSMUSG00205004251	lncRNA gene	Chr10:92806680-92807506 (+)
JF1/MsJ	ENSUMUG00000032510	lncRNA gene	Chr10:94555369-94555960 (+)
LP/J	ENSMUSG00230022537	lncRNA gene	Chr10:95010156-95010982 (+)
NOD/ShiLtJ	ENSMUSG00190027772	lncRNA gene	Chr10:93131329-93132155 (+)
NZO/HlLtJ	ENSMUSG00225022275	lncRNA gene	Chr10:99249885-99250711 (+)
PWK/PhJ	ENSLUMG00010005598	lncRNA gene	Chr10:92807297-92807888 (+)
SPRET/EiJ	ENSMSPG00010010763	lncRNA gene	Chr10:94447988-94448576 (+)
WSB/EiJ	ENSIUOG00005013096	lncRNA gene	Chr10:92845932-92846758 (+)

Homology

• Gene Tree
  Gm56972
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120516 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120516	Ensembl Gene Model | MGI Sequence Detail	3943	C57BL/6J
transcript	ENSMUST00000243918	Ensembl | MGI Sequence Detail	854	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56972:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95421	Chr10:96207072-96207103 (+)	-1 bp
Tssr95422	Chr10:96207124-96207132 (+)	39 bp
Tssr95423	Chr10:96207145-96207158 (+)	63 bp
Tssr95424	Chr10:96207180-96207189 (+)	96 bp