Gm56971 Gene Detail

Summary

• Symbol
  Gm56971
• Name
  predicted gene, 56971

• Feature Type
  lncRNA gene
• IDs
  MGI:7337855
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:126613426-126615640 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337855	lncRNA gene	Chr6:126613426-126615640 (-)
129S1/SvImJ	ENSMUSG00200046038	lncRNA gene	Chr6:123686698-123688912 (-)
A/J	ENSMUSG00195031409	lncRNA gene	Chr6:123114156-123116370 (-)
AKR/J	ENSMUSG00220034899	lncRNA gene	Chr6:121975781-121977995 (-)
BALB/cJ	ENSMUSG00180040196	lncRNA gene	Chr6:123451174-123453388 (-)
C3H/HeJ	ENSMUSG00175037886	lncRNA gene	Chr6:123114925-123117139 (-)
C57BL/6NJ	ENSMUSG00215032323	lncRNA gene	Chr6:123442542-123444756 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042783	lncRNA gene	Chr6:123293793-123296009 (-)
CBA/J	ENSMUSG00210016571	lncRNA gene	Chr6:123151526-123153740 (-)
DBA/2J	ENSMUSG00185043102	lncRNA gene	Chr6:123851777-123853991 (-)
FVB/NJ	ENSMUSG00205051363	lncRNA gene	Chr6:122723241-122725455 (-)
JF1/MsJ	ENSUMUG00000054020	lncRNA gene	Chr6:122263861-122266076 (-)
LP/J	ENSMUSG00230044076	lncRNA gene	Chr6:125048994-125051208 (-)
NOD/ShiLtJ	ENSMUSG00190036959	lncRNA gene	Chr6:122828423-122830637 (-)
NZO/HlLtJ	ENSMUSG00225018016	lncRNA gene	Chr6:127082020-127084234 (-)
PWK/PhJ	ENSLUMG00010049718	lncRNA gene	Chr6:121511922-121514138 (-)
SPRET/EiJ	ENSMSPG00010041111	lncRNA gene	Chr6:124371663-124373899 (-)
WSB/EiJ	ENSIUOG00005045148	lncRNA gene	Chr6:123542854-123545068 (-)

Homology

• Gene Tree
  Gm56971
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120976 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120976	Ensembl Gene Model | MGI Sequence Detail	2215	C57BL/6J
transcript	ENSMUST00000246735	Ensembl | MGI Sequence Detail	2215	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56971:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63329	Chr6:126617023-126617025 (-)	-1,384 bp
Tssr63328	Chr6:126615585-126615632 (-)	31 bp