Gm56970 Gene Detail

Summary

• Symbol
  Gm56970
• Name
  predicted gene, 56970

• Feature Type
  lncRNA gene
• IDs
  MGI:7337853
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:117546376-117547438 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337853	lncRNA gene	Chr10:117546376-117547438 (+)
129S1/SvImJ	ENSMUSG00200027950	lncRNA gene	Chr10:113951627-113951942 (+)
A/J	ENSMUSG00195023186	lncRNA gene	Chr10:114390070-114390385 (+)
AKR/J	ENSMUSG00220014855	lncRNA gene	Chr10:113965693-113966008 (+)
BALB/cJ	ENSMUSG00180017057	lncRNA gene	Chr10:114406942-114407257 (+)
C3H/HeJ	ENSMUSG00175026512	lncRNA gene	Chr10:114349255-114349570 (+)
C57BL/6NJ	ENSMUSG00215024658	lncRNA gene	Chr10:114050251-114050566 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033582	lncRNA gene	Chr10:113351181-113351496 (+)
CBA/J	ENSMUSG00210021277	lncRNA gene	Chr10:114198858-114199173 (+)
DBA/2J	ENSMUSG00185009748	lncRNA gene	Chr10:114324777-114325092 (+)
FVB/NJ	ENSMUSG00205024337	lncRNA gene	Chr10:113652953-113653268 (+)
JF1/MsJ	ENSUMUG00000026386	lncRNA gene	Chr10:115618911-115619230 (+)
LP/J	ENSMUSG00230025258	lncRNA gene	Chr10:116271874-116272189 (+)
NOD/ShiLtJ	ENSMUSG00190019552	lncRNA gene	Chr10:114451474-114451789 (+)
NZO/HlLtJ	ENSMUSG00225018982	lncRNA gene	Chr10:120531889-120532204 (+)
PWK/PhJ	ENSLUMG00010014038	lncRNA gene	Chr10:114010801-114011120 (+)
SPRET/EiJ	ENSMSPG00010016200	lncRNA gene	Chr10:115949402-115949722 (+)
WSB/EiJ	ENSIUOG00005014477	lncRNA gene	Chr10:114045062-114045377 (+)

Homology

• Gene Tree
  Gm56970
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120638 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120638	Ensembl Gene Model | MGI Sequence Detail	1063	C57BL/6J
transcript	ENSMUST00000244779	Ensembl | MGI Sequence Detail	1063	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56970:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95921	Chr10:117545979-117545990 (+)	-391 bp
Tssr95922	Chr10:117546058-117546097 (+)	-298 bp
Tssr95923	Chr10:117546792-117546852 (+)	446 bp