Gm56968 Gene Detail

Summary

• Symbol
  Gm56968
• Name
  predicted gene, 56968

• Feature Type
  lncRNA gene
• IDs
  MGI:7337849
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:99097225-99099066 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337849	lncRNA gene	Chr10:99097225-99099066 (+)
129S1/SvImJ	ENSMUSG00200020360	lncRNA gene	Chr10:95613795-95615170 (+)
A/J	ENSMUSG00195016052	lncRNA gene	Chr10:96040466-96041841 (+)
AKR/J	ENSMUSG00220026321	lncRNA gene	Chr10:95592558-95593936 (+)
BALB/cJ	ENSMUSG00180009804	lncRNA gene	Chr10:96048307-96049683 (+)
C3H/HeJ	ENSMUSG00175005963	lncRNA gene	Chr10:95943253-95944629 (+)
C57BL/6NJ	ENSMUSG00215007714	lncRNA gene	Chr10:95631681-95633056 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006127	lncRNA gene	Chr10:95315292-95316666 (+)
CBA/J	ENSMUSG00210023091	lncRNA gene	Chr10:95773154-95774530 (+)
DBA/2J	ENSMUSG00185018774	lncRNA gene	Chr10:95990378-95991753 (+)
FVB/NJ	ENSMUSG00205004139	lncRNA gene	Chr10:95689829-95691203 (+)
JF1/MsJ	ENSUMUG00000027183	lncRNA gene	Chr10:97399176-97400552 (+)
LP/J	ENSMUSG00230022884	lncRNA gene	Chr10:97908970-97910345 (+)
NOD/ShiLtJ	ENSMUSG00190027191	lncRNA gene	Chr10:96026528-96027902 (+)
NZO/HlLtJ	ENSMUSG00225040952	lncRNA gene	Chr10:102139909-102141283 (+)
PWK/PhJ	ENSLUMG00010005881	lncRNA gene	Chr10:95686007-95687375 (+)
SPRET/EiJ	ENSMSPG00010010926	lncRNA gene	Chr10:97405334-97406697 (+)
WSB/EiJ	ENSIUOG00005013217	lncRNA gene	Chr10:95726840-95728216 (+)

Homology

• Gene Tree
  Gm56968
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120240 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120240	Ensembl Gene Model | MGI Sequence Detail	1842	C57BL/6J
transcript	ENSMUST00000242060	Ensembl | MGI Sequence Detail	1842	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56968:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95542	Chr10:99097413-99097479 (+)	221 bp
Tssr95543	Chr10:99097731-99097753 (+)	517 bp