Gm56966 Gene Detail

Summary

• Symbol
  Gm56966
• Name
  predicted gene, 56966

• Feature Type
  lncRNA gene
• IDs
  MGI:7337845
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:79333008-79354141 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  538 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337845	lncRNA gene	Chr10:79333008-79354141 (+)
129S1/SvImJ	ENSMUSG00200050379	lncRNA gene	Chr10:75956259-75977385 (+)
A/J	ENSMUSG00195050727	lncRNA gene	Chr10:76351740-76372867 (+)
AKR/J	ENSMUSG00220048937	lncRNA gene	Chr10:75949301-75970431 (+)
BALB/cJ	ENSMUSG00180053459	lncRNA gene	Chr10:76362280-76383407 (+)
C3H/HeJ	ENSMUSG00175052450	lncRNA gene	Chr10:76232945-76254071 (+)
C57BL/6NJ	ENSMUSG00215053133	lncRNA gene	Chr10:75974627-75995754 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051659	lncRNA gene	Chr10:75859605-75880755 (+)
CBA/J	ENSMUSG00210050460	lncRNA gene	Chr10:76089036-76110163 (+)
DBA/2J	ENSMUSG00185053706	lncRNA gene	Chr10:76431415-76452543 (+)
FVB/NJ	ENSMUSG00205051718	lncRNA gene	Chr10:76144188-76165313 (+)
JF1/MsJ	ENSUMUG00000055850	lncRNA gene	Chr10:77662631-77683738 (+)
LP/J	ENSMUSG00230051473	lncRNA gene	Chr10:78201186-78222313 (+)
NOD/ShiLtJ	ENSMUSG00190052601	lncRNA gene	Chr10:76345250-76366379 (+)
NZO/HlLtJ	ENSMUSG00225052825	lncRNA gene	Chr10:82487658-82508785 (+)
PWK/PhJ	ENSLUMG00010052338	lncRNA gene	Chr10:76021729-76042840 (+)
SPRET/EiJ	ENSMSPG00010047894	lncRNA gene	Chr10:77633140-77640202 (+)
WSB/EiJ	ENSIUOG00005051700	lncRNA gene	Chr10:76048845-76069936 (+)

Homology

• Gene Tree
  Gm56966
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120605 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120605	Ensembl Gene Model | MGI Sequence Detail	21134	C57BL/6J
transcript	ENSMUST00000343861	Ensembl | MGI Sequence Detail	563	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56966:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94351	Chr10:79332773-79332815 (+)	-214 bp
Tssr94352	Chr10:79332990-79332998 (+)	-14 bp
Tssr94353	Chr10:79342733-79342763 (+)	9,740 bp