Gm56965 Gene Detail

Summary

• Symbol
  Gm56965
• Name
  predicted gene, 56965

• Feature Type
  lncRNA gene
• IDs
  MGI:7337843
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:99074796-99099752 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  720 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337843	lncRNA gene	Chr10:99074796-99099752 (-)
129S1/SvImJ	ENSMUSG00200020350	lncRNA gene	Chr10:95613139-95615270 (-)
A/J	ENSMUSG00195016017	lncRNA gene	Chr10:96039810-96041941 (-)
AKR/J	ENSMUSG00220026312	lncRNA gene	Chr10:95591906-95594036 (-)
BALB/cJ	ENSMUSG00180009793	lncRNA gene	Chr10:96047651-96049783 (-)
C3H/HeJ	ENSMUSG00175005961	lncRNA gene	Chr10:95942601-95944729 (-)
C57BL/6NJ	ENSMUSG00215007679	lncRNA gene	Chr10:95631025-95633156 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006120	lncRNA gene	Chr10:95314640-95316766 (-)
CBA/J	ENSMUSG00210023090	lncRNA gene	Chr10:95772502-95774630 (-)
DBA/2J	ENSMUSG00185018754	lncRNA gene	Chr10:95989722-95991853 (-)
FVB/NJ	ENSMUSG00205004119	lncRNA gene	Chr10:95689173-95691303 (-)
JF1/MsJ	ENSUMUG00000027052	lncRNA gene	Chr10:97398520-97400652 (-)
LP/J	ENSMUSG00230022744	lncRNA gene	Chr10:97908314-97910445 (-)
NOD/ShiLtJ	ENSMUSG00190027116	lncRNA gene	Chr10:96025872-96028002 (-)
NZO/HlLtJ	ENSMUSG00225040807	lncRNA gene	Chr10:102139253-102141383 (-)
PWK/PhJ	ENSLUMG00010005880	lncRNA gene	Chr10:95685355-95687475 (-)
SPRET/EiJ	ENSMSPG00010010908	lncRNA gene	Chr10:97404678-97406797 (-)
WSB/EiJ	ENSIUOG00005013211	lncRNA gene	Chr10:95726188-95728316 (-)

Homology

• Gene Tree
  Gm56965
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120503 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120503	Ensembl Gene Model | MGI Sequence Detail	24957	C57BL/6J
transcript	ENSMUST00000243804	Ensembl | MGI Sequence Detail	2990	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56965:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99122	Chr10:99098908-99098947 (-)	824 bp
Tssr99121	Chr10:99097571-99097588 (-)	2,172 bp
Tssr99120	Chr10:99077801-99077832 (-)	21,935 bp
Tssr99119	Chr10:99077787-99077796 (-)	21,960 bp