Gm56962 Gene Detail

Summary

• Symbol
  Gm56962
• Name
  predicted gene, 56962

• Feature Type
  lncRNA gene
• IDs
  MGI:7337837
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:126764232-126768972 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  230 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337837	lncRNA gene	Chr10:126764232-126768972 (+)
129S1/SvImJ	ENSMUSG00200013866	lncRNA gene	Chr10:123116995-123118314 (+)
A/J	ENSMUSG00195016984	lncRNA gene	Chr10:123581247-123582573 (+)
AKR/J	ENSMUSG00220006752	lncRNA gene	Chr10:123185612-123186931 (+)
BALB/cJ	ENSMUSG00180011434	lncRNA gene	Chr10:123572342-123573668 (+)
C3H/HeJ	ENSMUSG00175006176	lncRNA gene	Chr10:123570164-123571483 (+)
C57BL/6NJ	ENSMUSG00215021744	lncRNA gene	Chr10:123182388-123183714 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041600	lncRNA gene	Chr10:122540237-122541573 (+)
CBA/J	ENSMUSG00210009338	lncRNA gene	Chr10:123394326-123395645 (+)
DBA/2J	ENSMUSG00185027771	lncRNA gene	Chr10:123540434-123541753 (+)
FVB/NJ	ENSMUSG00205025840	lncRNA gene	Chr10:122800602-122801921 (+)
JF1/MsJ	ENSUMUG00000047219	lncRNA gene	Chr10:124835286-124836627 (+)
LP/J	ENSMUSG00230034479	lncRNA gene	Chr10:125457485-125458804 (+)
NOD/ShiLtJ	ENSMUSG00190016273	lncRNA gene	Chr10:123623128-123624447 (+)
NZO/HlLtJ	ENSMUSG00225037955	lncRNA gene	Chr10:129664919-129666238 (+)
PWK/PhJ	ENSLUMG00010010533	lncRNA gene	Chr10:123294798-123296139 (+)
SPRET/EiJ	ENSMSPG00010036984	lncRNA gene	Chr10:125250571-125251959 (+)
WSB/EiJ	ENSIUOG00005009174	lncRNA gene	Chr10:123181490-123182809 (+)

Homology

• Gene Tree
  Gm56962
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120565 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120565	Ensembl Gene Model | MGI Sequence Detail	4741	C57BL/6J
transcript	ENSMUST00000244202	Ensembl | MGI Sequence Detail	1464	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56962:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96097	Chr10:126764337-126764352 (+)	113 bp