Gm56960 Gene Detail

Summary

• Symbol
  Gm56960
• Name
  predicted gene, 56960

• Feature Type
  lncRNA gene
• IDs
  MGI:7337833
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:24971746-24974007 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337833	lncRNA gene	Chr10:24971746-24974007 (-)
129S1/SvImJ	ENSMUSG00200009970	lncRNA gene	Chr10:21815465-21817427 (-)
A/J	ENSMUSG00195014895	lncRNA gene	Chr10:22121479-22123441 (-)
AKR/J	ENSMUSG00220011268	lncRNA gene	Chr10:21801838-21803800 (-)
BALB/cJ	ENSMUSG00180018308	lncRNA gene	Chr10:22244731-22246693 (-)
C3H/HeJ	ENSMUSG00175025527	lncRNA gene	Chr10:21918572-21920534 (-)
C57BL/6NJ	ENSMUSG00215012720	lncRNA gene	Chr10:21760703-21762665 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014082	lncRNA gene	Chr10:21550018-21551972 (-)
CBA/J	ENSMUSG00210023662	lncRNA gene	Chr10:21877064-21879026 (-)
DBA/2J	ENSMUSG00185007239	lncRNA gene	Chr10:22047002-22048964 (-)
FVB/NJ	ENSMUSG00205010195	lncRNA gene	Chr10:22059434-22061380 (-)
JF1/MsJ	ENSUMUG00000020102	lncRNA gene	Chr10:21832537-21834477 (-)
LP/J	ENSMUSG00230011762	lncRNA gene	Chr10:23850033-23851995 (-)
NOD/ShiLtJ	ENSMUSG00190016172	lncRNA gene	Chr10:22191012-22192963 (-)
NZO/HlLtJ	ENSMUSG00225031305	lncRNA gene	Chr10:28094713-28096675 (-)
PWK/PhJ	ENSLUMG00010010774	lncRNA gene	Chr10:21736392-21738297 (-)
SPRET/EiJ	ENSMSPG00010015715	lncRNA gene	Chr10:22477294-22479111 (-)
WSB/EiJ	ENSIUOG00005030989	lncRNA gene	Chr10:21457843-21459805 (-)

Homology

• Gene Tree
  Gm56960
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120461 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120461	Ensembl Gene Model | MGI Sequence Detail	2262	C57BL/6J
transcript	ENSMUST00000243465	Ensembl | MGI Sequence Detail	1915	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56960:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97116	Chr10:24973989-24974012 (-)	6 bp