Gm56957 Gene Detail

Summary

• Symbol
  Gm56957
• Name
  predicted gene, 56957

• Feature Type
  lncRNA gene
• IDs
  MGI:7337827
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:99296368-99303548 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  317 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337827	lncRNA gene	Chr10:99296368-99303548 (-)
129S1/SvImJ	ENSMUSG00200020343	lncRNA gene	Chr10:95818708-95819878 (-)
A/J	ENSMUSG00195016844	lncRNA gene	Chr10:96245432-96246602 (-)
AKR/J	ENSMUSG00220025292	lncRNA gene	Chr10:95796718-95797922 (-)
BALB/cJ	ENSMUSG00180009527	lncRNA gene	Chr10:96253227-96254397 (-)
C3H/HeJ	ENSMUSG00175006107	lncRNA gene	Chr10:96153391-96154595 (-)
C57BL/6NJ	ENSMUSG00215006961	lncRNA gene	Chr10:95836674-95837844 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006232	lncRNA gene	Chr10:95513091-95514261 (-)
CBA/J	ENSMUSG00210022973	lncRNA gene	Chr10:95983280-95984484 (-)
DBA/2J	ENSMUSG00185019695	lncRNA gene	Chr10:96195272-96196442 (-)
FVB/NJ	ENSMUSG00205003625	lncRNA gene	Chr10:95892574-95893790 (-)
JF1/MsJ	ENSUMUG00000028873	lncRNA gene	Chr10:97604142-97605312 (-)
LP/J	ENSMUSG00230022961	lncRNA gene	Chr10:98113856-98115026 (-)
NOD/ShiLtJ	ENSMUSG00190025830	lncRNA gene	Chr10:96231250-96232466 (-)
NZO/HlLtJ	ENSMUSG00225040982	lncRNA gene	Chr10:102344847-102346017 (-)
PWK/PhJ	ENSLUMG00010006081	lncRNA gene	Chr10:95882823-95883122 (-)
SPRET/EiJ	ENSMSPG00010010887	lncRNA gene	Chr10:97609125-97610376 (-)
WSB/EiJ	ENSIUOG00005013484	lncRNA gene	Chr10:95930738-95931942 (-)

Homology

• Gene Tree
  Gm56957
  

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000120467 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120467	Ensembl Gene Model | MGI Sequence Detail	7181	C57BL/6J
transcript	ENSMUST00000243863	Ensembl | MGI Sequence Detail	1554	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56957:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99129	Chr10:99303524-99303536 (-)	18 bp
Tssr99128	Chr10:99303170-99303248 (-)	339 bp
Tssr3337	Chr10:99303138-99303160 (-)	399 bp