Gm56953 Gene Detail

Summary

• Symbol
  Gm56953
• Name
  predicted gene, 56953

• Feature Type
  lncRNA gene
• IDs
  MGI:7337819
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:53273205-53274877 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337819	lncRNA gene	Chr10:53273205-53274877 (-)
129S1/SvImJ	ENSMUSG00200007441	lncRNA gene	Chr10:50171587-50172138 (-)
A/J	ENSMUSG00195003080	lncRNA gene	Chr10:50439543-50440094 (-)
AKR/J	ENSMUSG00220006352	lncRNA gene	Chr10:50130680-50131231 (-)
BALB/cJ	ENSMUSG00180012659	lncRNA gene	Chr10:50569196-50569747 (-)
C3H/HeJ	ENSMUSG00175010498	lncRNA gene	Chr10:50312079-50312630 (-)
C57BL/6NJ	ENSMUSG00215002303	lncRNA gene	Chr10:50074273-50074824 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008549	lncRNA gene	Chr10:50301336-50301887 (-)
CBA/J	ENSMUSG00210008625	lncRNA gene	Chr10:50217912-50218463 (-)
DBA/2J	ENSMUSG00185003334	lncRNA gene	Chr10:50369657-50370208 (-)
FVB/NJ	ENSMUSG00205005520	lncRNA gene	Chr10:50303838-50304389 (-)
JF1/MsJ	ENSUMUG00000026564	lncRNA gene	Chr10:50063263-50063814 (-)
LP/J	ENSMUSG00230024209	lncRNA gene	Chr10:52171058-52171609 (-)
NOD/ShiLtJ	ENSMUSG00190005672	lncRNA gene	Chr10:50536368-50536919 (-)
NZO/HlLtJ	ENSMUSG00225022819	lncRNA gene	Chr10:56451972-56452523 (-)
PWK/PhJ	ENSLUMG00010004578	lncRNA gene	Chr10:50219488-50220039 (-)
SPRET/EiJ	ENSMSPG00010028289	lncRNA gene	Chr10:51578914-51579465 (-)
WSB/EiJ	ENSIUOG00005015428	lncRNA gene	Chr10:50179129-50179680 (-)

Homology

• Gene Tree
  Gm56953
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120431 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120431	Ensembl Gene Model | MGI Sequence Detail	1673	C57BL/6J
transcript	ENSMUST00000243279	Ensembl | MGI Sequence Detail	1673	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56953:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97591	Chr10:53274841-53274852 (-)	30 bp
Tssr97590	Chr10:53274799-53274824 (-)	65 bp