Gm56952 Gene Detail

Summary

• Symbol
  Gm56952
• Name
  predicted gene, 56952

• Feature Type
  lncRNA gene
• IDs
  MGI:7337817
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:38527698-38528225 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  65 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337817	lncRNA gene	Chr6:38527698-38528225 (+)
129S1/SvImJ	ENSMUSG00200046886	lncRNA gene	Chr6:35583022-35583549 (+)
A/J	ENSMUSG00195045008	lncRNA gene	Chr6:35554707-35555235 (+)
AKR/J	ENSMUSG00220009897	lncRNA gene	Chr6:35153367-35153894 (+)
BALB/cJ	ENSMUSG00180047988	lncRNA gene	Chr6:35683150-35683677 (+)
C3H/HeJ	ENSMUSG00175050057	lncRNA gene	Chr6:35510178-35510702 (+)
C57BL/6NJ	ENSMUSG00215049147	lncRNA gene	Chr6:35589514-35590042 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035983	lncRNA gene	Chr6:35087018-35087542 (+)
CBA/J	ENSMUSG00210052312	lncRNA gene	Chr6:35562076-35562600 (+)
DBA/2J	ENSMUSG00185048772	lncRNA gene	Chr6:35662665-35663188 (+)
FVB/NJ	ENSMUSG00205049983	lncRNA gene	Chr6:35639001-35639524 (+)
JF1/MsJ	ENSUMUG00000030020	lncRNA gene	Chr6:35310902-35311419 (+)
LP/J	ENSMUSG00230044299	lncRNA gene	Chr6:36588555-36589082 (+)
NOD/ShiLtJ	ENSMUSG00190049732	lncRNA gene	Chr6:35429068-35429596 (+)
NZO/HlLtJ	ENSMUSG00225009990	lncRNA gene	Chr6:38571149-38571676 (+)
PWK/PhJ	ENSLUMG00010046604	lncRNA gene	Chr6:35084918-35085450 (+)
SPRET/EiJ	ENSMSPG00010031317	lncRNA gene	Chr6:35698044-35698548 (+)
WSB/EiJ	ENSIUOG00005033877	lncRNA gene	Chr6:35765531-35766063 (+)

Homology

• Gene Tree
  Gm56952
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120919 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120919	Ensembl Gene Model | MGI Sequence Detail	528	C57BL/6J
transcript	ENSMUST00000246485	Ensembl | MGI Sequence Detail	528	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56952:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55654	Chr6:38527708-38527742 (+)	27 bp