Gm56949 Gene Detail

Summary

• Symbol
  Gm56949
• Name
  predicted gene, 56949

• Feature Type
  lncRNA gene
• IDs
  MGI:7337811
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:126808829-126814438 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  258 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337811	lncRNA gene	Chr10:126808829-126814438 (-)
129S1/SvImJ	ENSMUSG00200013852	lncRNA gene	Chr10:123166192-123167079 (-)
A/J	ENSMUSG00195016950	lncRNA gene	Chr10:123630462-123631349 (-)
AKR/J	ENSMUSG00220006743	lncRNA gene	Chr10:123234803-123235690 (-)
BALB/cJ	ENSMUSG00180011421	lncRNA gene	Chr10:123621560-123622447 (-)
C3H/HeJ	ENSMUSG00175006172	lncRNA gene	Chr10:123618859-123619740 (-)
C57BL/6NJ	ENSMUSG00215021672	lncRNA gene	Chr10:123231599-123232486 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041593	lncRNA gene	Chr10:122589120-122590025 (-)
CBA/J	ENSMUSG00210009331	lncRNA gene	Chr10:123443004-123443885 (-)
DBA/2J	ENSMUSG00185027766	lncRNA gene	Chr10:123589628-123590515 (-)
FVB/NJ	ENSMUSG00205025795	lncRNA gene	Chr10:122849353-122850240 (-)
JF1/MsJ	ENSUMUG00000047188	lncRNA gene	Chr10:124884051-124884952 (-)
LP/J	ENSMUSG00230034480	lncRNA gene	Chr10:125506669-125507556 (-)
NOD/ShiLtJ	ENSMUSG00190016256	lncRNA gene	Chr10:123671870-123672757 (-)
NZO/HlLtJ	ENSMUSG00225037963	lncRNA gene	Chr10:129714113-129715000 (-)
PWK/PhJ	ENSLUMG00010010526	lncRNA gene	Chr10:123343724-123344624 (-)
SPRET/EiJ	ENSMSPG00010036920	lncRNA gene	Chr10:125299572-125300461 (-)
WSB/EiJ	ENSIUOG00005009166	lncRNA gene	Chr10:123230355-123231244 (-)

Homology

• Gene Tree
  Gm56949
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120399 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120399	Ensembl Gene Model | MGI Sequence Detail	5610	C57BL/6J
transcript	ENSMUST00000243071	Ensembl | MGI Sequence Detail	1440	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56949:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99702	Chr10:126814747-126814765 (-)	-318 bp
Tssr99701	Chr10:126814400-126814438 (-)	19 bp
Tssr99700	Chr10:126814311-126814314 (-)	125 bp