Gm56948 Gene Detail

Summary

• Symbol
  Gm56948
• Name
  predicted gene, 56948

• Feature Type
  lncRNA gene
• IDs
  MGI:7337809
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:75698065-75729074 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  819 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337809	lncRNA gene	Chr10:75698065-75729074 (-)
129S1/SvImJ	ENSMUSG00200050355	lncRNA gene	Chr10:72423727-72430451 (-)
A/J	ENSMUSG00195049569	lncRNA gene	Chr10:72735867-72742592 (-)
AKR/J	ENSMUSG00220048699	lncRNA gene	Chr10:72395604-72402330 (-)
BALB/cJ	ENSMUSG00180052909	lncRNA gene	Chr10:72750331-72757057 (-)
C3H/HeJ	ENSMUSG00175052356	lncRNA gene	Chr10:72621661-72628386 (-)
C57BL/6NJ	ENSMUSG00215052962	lncRNA gene	Chr10:72359253-72365979 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051815	lncRNA gene	Chr10:72235067-72241575 (-)
CBA/J	ENSMUSG00210050323	lncRNA gene	Chr10:72477836-72484561 (-)
DBA/2J	ENSMUSG00185054395	lncRNA gene	Chr10:72820121-72826846 (-)
FVB/NJ	ENSMUSG00205051001	lncRNA gene	Chr10:72513143-72519870 (-)
JF1/MsJ	ENSUMUG00000056163	lncRNA gene	Chr10:73961831-73968329 (-)
LP/J	ENSMUSG00230051401	lncRNA gene	Chr10:74589717-74596442 (-)
NOD/ShiLtJ	ENSMUSG00190052468	lncRNA gene	Chr10:72797649-72804374 (-)
NZO/HlLtJ	ENSMUSG00225048735	lncRNA gene	Chr10:78886197-78892922 (-)
PWK/PhJ	ENSLUMG00010052227	lncRNA gene	Chr10:72356714-72363213 (-)
SPRET/EiJ	ENSMSPG00010048733	lncRNA gene	Chr10:74157660-74164169 (-)
WSB/EiJ	ENSIUOG00005051259	lncRNA gene	Chr10:72386328-72392901 (-)

Homology

• Gene Tree
  Gm56948
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120255 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120255	Ensembl Gene Model | MGI Sequence Detail	31010	C57BL/6J
transcript	ENSMUST00000242116	Ensembl | MGI Sequence Detail	1489	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56948:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98145	Chr10:75728895-75728916 (-)	168 bp
Tssr98144	Chr10:75728836-75728843 (-)	234 bp