Gm56947 Gene Detail

Summary

• Symbol
  Gm56947
• Name
  predicted gene, 56947

• Feature Type
  lncRNA gene
• IDs
  MGI:7337807
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:18793032-18826483 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1246 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337807	lncRNA gene	Chr10:18793032-18826483 (+)
129S1/SvImJ	ENSMUSG00200010442	lncRNA gene	Chr10:15798197-15799061 (+)
A/J	ENSMUSG00195007072	lncRNA gene	Chr10:15815695-15816559 (+)
AKR/J	ENSMUSG00220010199	lncRNA gene	Chr10:15717359-15718223 (+)
BALB/cJ	ENSMUSG00180015676	lncRNA gene	Chr10:15939968-15940832 (+)
C3H/HeJ	ENSMUSG00175020590	lncRNA gene	Chr10:15959785-15960649 (+)
C57BL/6NJ	ENSMUSG00215003956	lncRNA gene	Chr10:15744319-15745225 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029927	lncRNA gene	Chr10:15712190-15713137 (+)
CBA/J	ENSMUSG00210015550	lncRNA gene	Chr10:15897441-15898305 (+)
DBA/2J	ENSMUSG00185007248	lncRNA gene	Chr10:15881980-15882844 (+)
FVB/NJ	ENSMUSG00205020017	lncRNA gene	Chr10:15792934-15793798 (+)
JF1/MsJ	ENSUMUG00000015391	lncRNA gene	Chr10:15937163-15938026 (+)
LP/J	ENSMUSG00230019469	lncRNA gene	Chr10:17538407-17539271 (+)
NOD/ShiLtJ	ENSMUSG00190011076	lncRNA gene	Chr10:15860957-15861863 (+)
NZO/HlLtJ	ENSMUSG00225031027	lncRNA gene	Chr10:22003156-22004062 (+)
PWK/PhJ	ENSLUMG00010015677	lncRNA gene	Chr10:15675936-15676799 (+)
SPRET/EiJ	ENSMSPG00010011112	lncRNA gene	Chr10:16302007-16303209 (+)
WSB/EiJ	ENSIUOG00005022939	lncRNA gene	Chr10:15500438-15501344 (+)

Homology

• Gene Tree
  Gm56947
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120350 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120350	Ensembl Gene Model | MGI Sequence Detail	33452	C57BL/6J
transcript	ENSMUST00000269308	Ensembl | MGI Sequence Detail	1601	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56947:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92507	Chr10:18793020-18793038 (+)	-3 bp
Tssr92508	Chr10:18819602-18819613 (+)	26,576 bp