Gm56946 Gene Detail

Summary

• Symbol
  Gm56946
• Name
  predicted gene, 56946

• Feature Type
  lncRNA gene
• IDs
  MGI:7337805
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:3667715-3682025 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  535 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337805	lncRNA gene	Chr10:3667715-3682025 (+)
129S1/SvImJ	ENSMUSG00200010502	lncRNA gene	Chr10:625471-626695 (+)
A/J	ENSMUSG00195010105	lncRNA gene	Chr10:600408-601632 (+)
AKR/J	ENSMUSG00220007654	lncRNA gene	Chr10:635513-636737 (+)
BALB/cJ	ENSMUSG00180023669	lncRNA gene	Chr10:694749-695974 (+)
C3H/HeJ	ENSMUSG00175012998	lncRNA gene	Chr10:666001-667224 (+)
C57BL/6NJ	ENSMUSG00215005303	lncRNA gene	Chr10:603363-604586 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018241	lncRNA gene	Chr10:682316-683538 (+)
CBA/J	ENSMUSG00210012572	lncRNA gene	Chr10:614412-615635 (+)
DBA/2J	ENSMUSG00185010394	lncRNA gene	Chr10:672445-673668 (+)
FVB/NJ	ENSMUSG00205008674	lncRNA gene	Chr10:653625-654848 (+)
JF1/MsJ	ENSUMUG00000037199	lncRNA gene	Chr10:796200-797421 (+)
LP/J	ENSMUSG00230017412	lncRNA gene	Chr10:2293846-2295070 (+)
NOD/ShiLtJ	ENSMUSG00190026791	lncRNA gene	Chr10:607103-608326 (+)
NZO/HlLtJ	ENSMUSG00225013755	lncRNA gene	Chr10:6793097-6794320 (+)
PWK/PhJ	ENSLUMG00010021089	lncRNA gene	Chr10:645759-646982 (+)
SPRET/EiJ	ENSMSPG00010006902	lncRNA gene	Chr10:821996-823220 (+)
WSB/EiJ	ENSIUOG00005014095	lncRNA gene	Chr10:647559-648782 (+)

Homology

• Gene Tree
  Gm56946
  

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000120143 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120143	Ensembl Gene Model | MGI Sequence Detail	14311	C57BL/6J
transcript	ENSMUST00000241584	Ensembl | MGI Sequence Detail	1721	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;