Gm56943 Gene Detail

Summary

• Symbol
  Gm56943
• Name
  predicted gene, 56943

• Feature Type
  lncRNA gene
• IDs
  MGI:7337799
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:127457151-127459310 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337799	lncRNA gene	Chr10:127457151-127459310 (+)
129S1/SvImJ	ENSMUSG00200013652	lncRNA gene	Chr10:123810181-123810803 (+)
A/J	ENSMUSG00195018050	lncRNA gene	Chr10:124272934-124273556 (+)
AKR/J	ENSMUSG00220006581	lncRNA gene	Chr10:123878830-123879452 (+)
BALB/cJ	ENSMUSG00180011551	lncRNA gene	Chr10:124263989-124264611 (+)
C3H/HeJ	ENSMUSG00175006272	lncRNA gene	Chr10:124263277-124263899 (+)
C57BL/6NJ	ENSMUSG00215022825	lncRNA gene	Chr10:123875387-123876009 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042298	lncRNA gene	Chr10:123247029-123247651 (+)
CBA/J	ENSMUSG00210009355	lncRNA gene	Chr10:124087466-124088088 (+)
DBA/2J	ENSMUSG00185027571	lncRNA gene	Chr10:124242225-124242847 (+)
FVB/NJ	ENSMUSG00205026861	lncRNA gene	Chr10:123484002-123484624 (+)
JF1/MsJ	ENSUMUG00000045236	lncRNA gene	Chr10:125536343-125536965 (+)
LP/J	ENSMUSG00230033796	lncRNA gene	Chr10:126157469-126158091 (+)
NOD/ShiLtJ	ENSMUSG00190015933	lncRNA gene	Chr10:124306180-124306802 (+)
NZO/HlLtJ	ENSMUSG00225037623	lncRNA gene	Chr10:130359985-130360607 (+)
PWK/PhJ	ENSLUMG00010010775	lncRNA gene	Chr10:123997160-123997782 (+)
SPRET/EiJ	ENSMSPG00010039343	lncRNA gene	Chr10:125950146-125950776 (+)
WSB/EiJ	ENSIUOG00005009248	lncRNA gene	Chr10:123874069-123874691 (+)

Homology

• Gene Tree
  Gm56943
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120065 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120065	Ensembl Gene Model | MGI Sequence Detail	2160	C57BL/6J
transcript	ENSMUST00000241193	Ensembl | MGI Sequence Detail	1142	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56943:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96227	Chr10:127457167-127457192 (+)	29 bp
Tssr96228	Chr10:127457649-127457670 (+)	509 bp