Gm56942 Gene Detail

Summary

• Symbol
  Gm56942
• Name
  predicted gene, 56942

• Feature Type
  lncRNA gene
• IDs
  MGI:7337797
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:17352609-17368299 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  423 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337797	lncRNA gene	Chr10:17352609-17368299 (+)
129S1/SvImJ	ENSMUSG00200011526	lncRNA gene	Chr10:14339167-14354737 (+)
A/J	ENSMUSG00195006948	lncRNA gene	Chr10:14349835-14365409 (+)
AKR/J	ENSMUSG00220010141	lncRNA gene	Chr10:14262837-14278379 (+)
BALB/cJ	ENSMUSG00180015118	lncRNA gene	Chr10:14474146-14489720 (+)
C3H/HeJ	ENSMUSG00175021371	lncRNA gene	Chr10:14494096-14509652 (+)
C57BL/6NJ	ENSMUSG00215003748	lncRNA gene	Chr10:14303514-14319080 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030506	lncRNA gene	Chr10:14268736-14284338 (+)
CBA/J	ENSMUSG00210015812	lncRNA gene	Chr10:14431748-14447304 (+)
DBA/2J	ENSMUSG00185007220	lncRNA gene	Chr10:14416228-14431802 (+)
FVB/NJ	ENSMUSG00205019170	lncRNA gene	Chr10:14320647-14336214 (+)
JF1/MsJ	ENSUMUG00000015262	lncRNA gene	Chr10:14485568-14501138 (+)
LP/J	ENSMUSG00230019144	lncRNA gene	Chr10:16072759-16088333 (+)
NOD/ShiLtJ	ENSMUSG00190011489	lncRNA gene	Chr10:14402790-14418360 (+)
NZO/HlLtJ	ENSMUSG00225030915	lncRNA gene	Chr10:20562463-20578029 (+)
PWK/PhJ	ENSLUMG00010015294	lncRNA gene	Chr10:14211456-14227018 (+)
SPRET/EiJ	ENSMSPG00010010960	lncRNA gene	Chr10:14797599-14813129 (+)
WSB/EiJ	ENSIUOG00005024228	lncRNA gene	Chr10:14020270-14035840 (+)

Homology

• Gene Tree
  Gm56942
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120020 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120020	Ensembl Gene Model | MGI Sequence Detail	15691	C57BL/6J
transcript	ENSMUST00000241057	Ensembl | MGI Sequence Detail	1173	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56942:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92441	Chr10:17352599-17352633 (+)	7 bp
Tssr92442	Chr10:17352741-17352752 (+)	138 bp