Gm56941 Gene Detail

Summary

• Symbol
  Gm56941
• Name
  predicted gene, 56941

• Feature Type
  lncRNA gene
• IDs
  MGI:7337795
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:127130006-127132359 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337795	lncRNA gene	Chr6:127130006-127132359 (-)
129S1/SvImJ	ENSMUSG00200046255	lncRNA gene	Chr6:124204339-124205349 (-)
A/J	ENSMUSG00195031518	lncRNA gene	Chr6:123628847-123629859 (-)
AKR/J	ENSMUSG00220043408	lncRNA gene	Chr6:122490492-122491504 (-)
BALB/cJ	ENSMUSG00180037366	lncRNA gene	Chr6:123965865-123966877 (-)
C3H/HeJ	ENSMUSG00175038042	lncRNA gene	Chr6:123629566-123630578 (-)
C57BL/6NJ	ENSMUSG00215035141	lncRNA gene	Chr6:123960326-123961336 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041262	lncRNA gene	Chr6:123804556-123805567 (-)
CBA/J	ENSMUSG00210016557	lncRNA gene	Chr6:123666114-123667126 (-)
DBA/2J	ENSMUSG00185047097	lncRNA gene	Chr6:124366440-124367452 (-)
FVB/NJ	ENSMUSG00205043307	lncRNA gene	Chr6:123237944-123238955 (-)
JF1/MsJ	ENSUMUG00000053491	lncRNA gene	Chr6:122781841-122782856 (-)
LP/J	ENSMUSG00230044896	lncRNA gene	Chr6:125563632-125564644 (-)
NOD/ShiLtJ	ENSMUSG00190044503	lncRNA gene	Chr6:123342415-123343426 (-)
NZO/HlLtJ	ENSMUSG00225016874	lncRNA gene	Chr6:127597339-127598350 (-)
PWK/PhJ	ENSLUMG00010049450	lncRNA gene	Chr6:122032432-122033444 (-)
SPRET/EiJ	ENSMSPG00010043887	lncRNA gene	Chr6:124886421-124887443 (-)
WSB/EiJ	ENSIUOG00005046311	lncRNA gene	Chr6:124052869-124053887 (-)

Homology

• Gene Tree
  Gm56941
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120876 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120876	Ensembl Gene Model | MGI Sequence Detail	2354	C57BL/6J
transcript	ENSMUST00000246237	Ensembl | MGI Sequence Detail	1725	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56941:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63379	Chr6:127131690-127131711 (-)	658 bp