Gm56940 Gene Detail

Summary

• Symbol
  Gm56940
• Name
  predicted gene, 56940

• Feature Type
  lncRNA gene
• IDs
  MGI:7337793
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:70347182-70349613 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  274 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337793	lncRNA gene	Chr6:70347182-70349613 (-)
129S1/SvImJ	ENSMUSG00200013980	lncRNA gene	Chr6:67252485-67254916 (-)
A/J	ENSMUSG00195046501	lncRNA gene	Chr6:67012187-67014618 (-)
AKR/J	ENSMUSG00220045525	lncRNA gene	Chr6:66022410-66023140 (-)
BALB/cJ	ENSMUSG00180040556	lncRNA gene	Chr6:67212053-67215334 (-)
C3H/HeJ	ENSMUSG00175014494	lncRNA gene	Chr6:110085397-110087828 (+)
C57BL/6NJ	ENSMUSG00215043877	lncRNA gene	Chr6:67339872-67342303 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038775	lncRNA gene	Chr6:67435831-67436561 (-)
CBA/J	ENSMUSG00210045282	lncRNA gene	Chr6:67159843-67162274 (-)
DBA/2J	ENSMUSG00185047790	lncRNA gene	Chr6:67725078-67727509 (-)
FVB/NJ	ENSMUSG00205037609	lncRNA gene	Chr6:66539345-66541776 (-)
JF1/MsJ	ENSUMUG00000046721	lncRNA gene	Chr6:66746093-66746823 (-)
LP/J	ENSMUSG00230028957	lncRNA gene	Chr6:68845338-68847769 (-)
NOD/ShiLtJ	ENSMUSG00190043136	lncRNA gene	Chr6:66686643-66687373 (-)
NZO/HlLtJ	ENSMUSG00225020571	lncRNA gene	Chr6:70819221-70821652 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010031168	lncRNA gene	Chr6:67996503-67999776 (-)
WSB/EiJ	ENSIUOG00005024910	lncRNA gene	Chr6:67820760-67824172 (-)

Homology

• Gene Tree
  Gm56940
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000120845 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120845	Ensembl Gene Model | MGI Sequence Detail	2432	C57BL/6J
transcript	ENSMUST00000246085	Ensembl | MGI Sequence Detail	781	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56940:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61314	Chr6:70349611-70349619 (-)	-2 bp