Gm56936 Gene Detail

Summary

• Symbol
  Gm56936
• Name
  predicted gene, 56936

• Feature Type
  lncRNA gene
• IDs
  MGI:7337785
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr6:38664442-38667177 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337785	lncRNA gene	Chr6:38664442-38667177 (-)
129S1/SvImJ	ENSMUSG00200047561	lncRNA gene	Chr6:35719786-35721368 (-)
A/J	ENSMUSG00195044931	lncRNA gene	Chr6:35691469-35693051 (-)
AKR/J	ENSMUSG00220009476	lncRNA gene	Chr6:35290120-35291700 (-)
BALB/cJ	ENSMUSG00180048391	lncRNA gene	Chr6:35819937-35821517 (-)
C3H/HeJ	ENSMUSG00175048997	lncRNA gene	Chr6:35646972-35648556 (-)
C57BL/6NJ	ENSMUSG00215048665	lncRNA gene	Chr6:35726288-35727866 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036537	lncRNA gene	Chr6:35221791-35223375 (-)
CBA/J	ENSMUSG00210052539	lncRNA gene	Chr6:35698868-35700452 (-)
DBA/2J	ENSMUSG00185049672	lncRNA gene	Chr6:35799455-35801041 (-)
FVB/NJ	ENSMUSG00205051106	lncRNA gene	Chr6:35775783-35777365 (-)
JF1/MsJ	ENSUMUG00000031070	lncRNA gene	Chr6:35449348-35450928 (-)
LP/J	ENSMUSG00230043817	lncRNA gene	Chr6:36725306-36726886 (-)
NOD/ShiLtJ	ENSMUSG00190050262	lncRNA gene	Chr6:35565810-35567392 (-)
NZO/HlLtJ	ENSMUSG00225009705	lncRNA gene	Chr6:38707896-38709476 (-)
PWK/PhJ	ENSLUMG00010046520	lncRNA gene	Chr6:35222792-35224359 (-)
SPRET/EiJ	ENSMSPG00010034518	lncRNA gene	Chr6:35832267-35833847 (-)
WSB/EiJ	ENSIUOG00005033528	lncRNA gene	Chr6:35902304-35903884 (-)

Homology

• Gene Tree
  Gm56936
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120732 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120732	Ensembl Gene Model | MGI Sequence Detail	2736	C57BL/6J
transcript	ENSMUST00000245461	Ensembl | MGI Sequence Detail	2736	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56936:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60423	Chr6:38668811-38668834 (-)	-1,646 bp
Tssr60422	Chr6:38666466-38666490 (-)	699 bp
Tssr60421	Chr6:38665980-38666008 (-)	1,183 bp
Tssr60420	Chr6:38665043-38665067 (-)	2,122 bp
Tssr60419	Chr6:38664957-38664967 (-)	2,215 bp