Gm56934 Gene Detail

Summary

• Symbol
  Gm56934
• Name
  predicted gene, 56934

• Feature Type
  lncRNA gene
• IDs
  MGI:7337781
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr6:41531365-41532836 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337781	lncRNA gene	Chr6:41531365-41532836 (+)
129S1/SvImJ	ENSMUSG00200046185	lncRNA gene	Chr6:38589344-38589958 (+)
A/J	ENSMUSG00195043759	lncRNA gene	Chr6:38559047-38559661 (+)
AKR/J	ENSMUSG00220009274	lncRNA gene	Chr6:38159843-38160457 (+)
BALB/cJ	ENSMUSG00180047081	lncRNA gene	Chr6:38687426-38688040 (+)
C3H/HeJ	ENSMUSG00175049634	lncRNA gene	Chr6:38514537-38515151 (+)
C57BL/6NJ	ENSMUSG00215047771	lncRNA gene	Chr6:38613222-38613836 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036392	lncRNA gene	Chr6:38019426-38020040 (+)
CBA/J	ENSMUSG00210052267	lncRNA gene	Chr6:38566296-38566910 (+)
DBA/2J	ENSMUSG00185048948	lncRNA gene	Chr6:38668796-38669410 (+)
FVB/NJ	ENSMUSG00205050829	lncRNA gene	Chr6:38469188-38469802 (+)
JF1/MsJ	ENSUMUG00000026819	lncRNA gene	Chr6:38212463-38213077 (+)
LP/J	ENSMUSG00230043584	lncRNA gene	Chr6:39592472-39593086 (+)
NOD/ShiLtJ	ENSMUSG00190048885	lncRNA gene	Chr6:38458256-38458870 (+)
NZO/HlLtJ	ENSMUSG00225020508	lncRNA gene	Chr6:41575118-41575732 (+)
PWK/PhJ	ENSLUMG00010046143	lncRNA gene	Chr6:38044269-38044883 (+)
SPRET/EiJ	ENSMSPG00010031986	lncRNA gene	Chr6:38766271-38766876 (+)
WSB/EiJ	ENSIUOG00005033060	lncRNA gene	Chr6:38722207-38722821 (+)

Homology

• Gene Tree
  Gm56934
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120647 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120647	Ensembl Gene Model | MGI Sequence Detail	1472	C57BL/6J
transcript	ENSMUST00000244848	Ensembl | MGI Sequence Detail	1472	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56934:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55958	Chr6:41530471-41530493 (+)	-883 bp
Tssr55959	Chr6:41530498-41530529 (+)	-851 bp
Tssr55960	Chr6:41530558-41530566 (+)	-803 bp
Tssr55961	Chr6:41531449-41531457 (+)	88 bp
Tssr55962	Chr6:41531655-41531676 (+)	301 bp
Tssr55963	Chr6:41531744-41531765 (+)	390 bp
Tssr55964	Chr6:41531788-41531799 (+)	429 bp