Gm56929 Gene Detail

Summary

• Symbol
  Gm56929
• Name
  predicted gene, 56929

• Feature Type
  lncRNA gene
• IDs
  MGI:7337771
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:100647520-100649472 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337771	lncRNA gene	Chr6:100647520-100649472 (+)
129S1/SvImJ	ENSMUSG00200020958	lncRNA gene	Chr6:97645134-97645954 (+)
A/J	ENSMUSG00195002241	lncRNA gene	Chr6:97344285-97345105 (+)
AKR/J	ENSMUSG00220022127	lncRNA gene	Chr6:96260266-96261086 (+)
BALB/cJ	ENSMUSG00180010541	lncRNA gene	Chr6:97728612-97729432 (+)
C3H/HeJ	ENSMUSG00175016605	lncRNA gene	Chr6:79697583-79698403 (-)
C57BL/6NJ	ENSMUSG00215014308	lncRNA gene	Chr6:97725101-97725921 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001230	lncRNA gene	Chr6:97734106-97734921 (+)
CBA/J	ENSMUSG00210004248	lncRNA gene	Chr6:97534138-97534958 (+)
DBA/2J	ENSMUSG00185026035	lncRNA gene	Chr6:98015929-98016749 (+)
FVB/NJ	ENSMUSG00205013157	lncRNA gene	Chr6:96724557-96725377 (+)
JF1/MsJ	ENSUMUG00000002164	lncRNA gene	Chr6:96888284-96889099 (+)
LP/J	ENSMUSG00230013417	lncRNA gene	Chr6:99205281-99206101 (+)
NOD/ShiLtJ	ENSMUSG00190003065	lncRNA gene	Chr6:97188735-97189555 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010015906	lncRNA gene	Chr6:96333791-96334605 (+)
SPRET/EiJ	ENSMSPG00010018891	lncRNA gene	Chr6:98743165-98743986 (+)
WSB/EiJ	ENSIUOG00005002919	lncRNA gene	Chr6:98127631-98128450 (+)

Homology

• Gene Tree
  Gm56929
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120271 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120271	Ensembl Gene Model | MGI Sequence Detail	1953	C57BL/6J
transcript	ENSMUST00000242198	Ensembl | MGI Sequence Detail	1953	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56929:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57993	Chr6:100647649-100647659 (+)	134 bp