Gm56918 Gene Detail

Summary

• Symbol
  Gm56918
• Name
  predicted gene, 56918

• Feature Type
  lncRNA gene
• IDs
  MGI:7337749
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:56426774-56428077 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337749	lncRNA gene	Chr17:56426774-56428077 (+)
129S1/SvImJ	ENSMUSG00200016752	lncRNA gene	Chr17:51702290-51703157 (+)
A/J	ENSMUSG00195007149	lncRNA gene	Chr17:53089716-53090583 (+)
AKR/J	ENSMUSG00220013384	lncRNA gene	Chr17:52139155-52140022 (+)
BALB/cJ	ENSMUSG00180006511	lncRNA gene	Chr17:52847352-52848219 (+)
C3H/HeJ	ENSMUSG00175007679	lncRNA gene	Chr17:52163413-52164280 (+)
C57BL/6NJ	ENSMUSG00215009186	lncRNA gene	Chr17:51777540-51778407 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019628	lncRNA gene	Chr17:52895882-52896749 (+)
CBA/J	ENSMUSG00210028893	lncRNA gene	Chr17:51930478-51931345 (+)
DBA/2J	ENSMUSG00185009614	lncRNA gene	Chr17:54800336-54801203 (+)
FVB/NJ	ENSMUSG00205007257	lncRNA gene	Chr17:52477988-52478855 (+)
JF1/MsJ	ENSUMUG00000034033	lncRNA gene	Chr17:54478662-54479529 (+)
LP/J	ENSMUSG00230028954	lncRNA gene	Chr17:55779720-55780584 (+)
NOD/ShiLtJ	ENSMUSG00190010702	lncRNA gene	Chr17:51933183-51934050 (+)
NZO/HlLtJ	ENSMUSG00225043401	lncRNA gene	Chr17:58063547-58064414 (+)
PWK/PhJ	ENSLUMG00010009925	lncRNA gene	Chr17:51738055-51738922 (+)
SPRET/EiJ	ENSMSPG00010005986	lncRNA gene	Chr17:52054795-52055654 (+)
WSB/EiJ	ENSIUOG00005024583	lncRNA gene	Chr17:52839850-52840717 (+)

Homology

• Gene Tree
  Gm56918
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121227 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121227	Ensembl Gene Model | MGI Sequence Detail	1304	C57BL/6J
transcript	ENSMUST00000247515	Ensembl | MGI Sequence Detail	1304	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56918:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5174	Chr17:56427194-56427215 (+)	431 bp