Gm56917 Gene Detail

Summary

• Symbol
  Gm56917
• Name
  predicted gene, 56917

• Feature Type
  lncRNA gene
• IDs
  MGI:7337747
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:66538837-66573923 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1364 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337747	lncRNA gene	Chr17:66538837-66573923 (-)
129S1/SvImJ	ENSMUSG00200039232	lncRNA gene	Chr17:61906582-61923230 (-)
A/J	ENSMUSG00195018681	lncRNA gene	Chr17:63249005-63265526 (-)
AKR/J	ENSMUSG00220018970	lncRNA gene	Chr17:62320589-62337233 (-)
BALB/cJ	ENSMUSG00180021067	lncRNA gene	Chr17:62986403-63002923 (-)
C3H/HeJ	ENSMUSG00175033021	lncRNA gene	Chr17:62293712-62310353 (-)
C57BL/6NJ	ENSMUSG00215033204	lncRNA gene	Chr17:61945465-61962107 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026516	lncRNA gene	Chr17:62904191-62920749 (-)
CBA/J	ENSMUSG00210030566	lncRNA gene	Chr17:62093635-62110279 (-)
DBA/2J	ENSMUSG00185022860	lncRNA gene	Chr17:64938270-64954790 (-)
FVB/NJ	ENSMUSG00205017872	lncRNA gene	Chr17:62712852-62729372 (-)
JF1/MsJ	ENSUMUG00000042566	lncRNA gene	Chr17:64590902-64607413 (-)
LP/J	ENSMUSG00230017015	lncRNA gene	Chr17:65924819-65941464 (-)
NOD/ShiLtJ	ENSMUSG00190040086	lncRNA gene	Chr17:62072747-62089264 (-)
NZO/HlLtJ	ENSMUSG00225026118	lncRNA gene	Chr17:68200470-68217068 (-)
PWK/PhJ	ENSLUMG00010029711	lncRNA gene	Chr17:61875083-61891598 (-)
SPRET/EiJ	ENSMSPG00010018073	lncRNA gene	Chr17:62239467-62254006 (-)
WSB/EiJ	ENSIUOG00005032270	lncRNA gene	Chr17:62935466-62952245 (-)

Homology

• Gene Tree
  Gm56917
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000121208 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121208	Ensembl Gene Model | MGI Sequence Detail	35087	C57BL/6J
transcript	ENSMUST00000233985	Ensembl | MGI Sequence Detail	1683	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm56917:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149113	Chr17:66573896-66573924 (-)	13 bp