Gm56916 Gene Detail

Summary

• Symbol
  Gm56916
• Name
  predicted gene, 56916

• Feature Type
  lncRNA gene
• IDs
  MGI:7337745
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr17:79922937-79924418 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337745	lncRNA gene	Chr17:79922937-79924418 (+)
129S1/SvImJ	ENSMUSG00200024925	lncRNA gene	Chr17:75290010-75291491 (+)
A/J	ENSMUSG00195028319	lncRNA gene	Chr17:76653622-76655103 (+)
AKR/J	ENSMUSG00220013960	lncRNA gene	Chr17:75561302-75562783 (+)
BALB/cJ	ENSMUSG00180005016	lncRNA gene	Chr17:76363277-76364758 (+)
C3H/HeJ	ENSMUSG00175016695	lncRNA gene	Chr17:75632417-75633898 (+)
C57BL/6NJ	ENSMUSG00215015253	lncRNA gene	Chr17:75350075-75351556 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015551	lncRNA gene	Chr17:76219056-76220537 (+)
CBA/J	ENSMUSG00210020567	lncRNA gene	Chr17:75495746-75497227 (+)
DBA/2J	ENSMUSG00185012886	lncRNA gene	Chr17:78329266-78330747 (+)
FVB/NJ	ENSMUSG00205031801	lncRNA gene	Chr17:76105813-76107294 (+)
JF1/MsJ	ENSUMUG00000024806	lncRNA gene	Chr17:78031598-78033075 (+)
LP/J	ENSMUSG00230021919	lncRNA gene	Chr17:79330869-79332350 (+)
NOD/ShiLtJ	ENSMUSG00190009799	lncRNA gene	Chr17:75394489-75395970 (+)
NZO/HlLtJ	ENSMUSG00225031472	lncRNA gene	Chr17:81591834-81593315 (+)
PWK/PhJ	ENSLUMG00010005695	lncRNA gene	Chr17:75265107-75266583 (+)
SPRET/EiJ	ENSMSPG00010008903	lncRNA gene	Chr17:75746613-75748087 (+)
WSB/EiJ	ENSIUOG00005010677	lncRNA gene	Chr17:76315695-76317178 (+)

Homology

• Gene Tree
  Gm56916
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121204 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121204	Ensembl Gene Model | MGI Sequence Detail	1482	C57BL/6J
transcript	ENSMUST00000247444	Ensembl | MGI Sequence Detail	1482	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56916:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145919	Chr17:79922462-79922472 (+)	-470 bp
Tssr145920	Chr17:79922487-79922500 (+)	-443 bp
Tssr145921	Chr17:79922621-79922632 (+)	-310 bp
Tssr145922	Chr17:79922637-79922660 (+)	-288 bp
Tssr145923	Chr17:79922665-79922681 (+)	-264 bp
Tssr145924	Chr17:79922684-79922725 (+)	-232 bp
Tssr145925	Chr17:79922945-79922971 (+)	21 bp
Tssr145926	Chr17:79924291-79924302 (+)	1,360 bp