Gm56915 Gene Detail

Summary

• Symbol
  Gm56915
• Name
  predicted gene, 56915

• Feature Type
  lncRNA gene
• IDs
  MGI:7337743
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26051657-26053471 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337743	lncRNA gene	Chr17:26051657-26053471 (+)
129S1/SvImJ	ENSMUSG00200053882	lncRNA gene	Chr17:21497072-21498234 (+)
A/J	ENSMUSG00195054407	lncRNA gene	Chr17:22514266-22515428 (+)
AKR/J	ENSMUSG00220053761	lncRNA gene	Chr17:21561021-21562183 (+)
BALB/cJ	ENSMUSG00180051584	lncRNA gene	Chr17:21795078-21796240 (+)
C3H/HeJ	ENSMUSG00175053947	lncRNA gene	Chr17:21553323-21554485 (+)
C57BL/6NJ	ENSMUSG00215054206	lncRNA gene	Chr17:21561664-21562826 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050583	lncRNA gene	Chr17:22143165-22144327 (+)
CBA/J	ENSMUSG00210050959	lncRNA gene	Chr17:21392164-21393326 (+)
DBA/2J	ENSMUSG00185055452	lncRNA gene	Chr17:23602531-23603693 (+)
FVB/NJ	ENSMUSG00205052689	lncRNA gene	Chr17:21857985-21859147 (+)
JF1/MsJ	ENSUMUG00000057887	lncRNA gene	Chr17:23057837-23058999 (+)
LP/J	ENSMUSG00230055068	lncRNA gene	Chr17:25001607-25002769 (+)
NOD/ShiLtJ	ENSMUSG00190054414	lncRNA gene	Chr17:21491246-21492408 (+)
NZO/HlLtJ	ENSMUSG00225054371	lncRNA gene	Chr17:26921597-26922759 (+)
PWK/PhJ	ENSLUMG00010053332	lncRNA gene	Chr17:20976968-20978130 (+)
SPRET/EiJ	ENSMSPG00010049866	lncRNA gene	Chr17:22295854-22297012 (+)
WSB/EiJ	ENSIUOG00005052313	lncRNA gene	Chr17:22234911-22236073 (+)

Homology

• Gene Tree
  Gm56915
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120308 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120308	Ensembl Gene Model | MGI Sequence Detail	1815	C57BL/6J
transcript	ENSMUST00000246355	Ensembl | MGI Sequence Detail	1815	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56915:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143193	Chr17:26052081-26052128 (+)	448 bp