Gm56914 Gene Detail

Summary

• Symbol
  Gm56914
• Name
  predicted gene, 56914

• Feature Type
  lncRNA gene
• IDs
  MGI:7337741
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:5140033-5140256 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337741	lncRNA gene	Chr17:5140033-5140256 (+)
129S1/SvImJ	ENSMUSG00200034323	lncRNA gene	Chr17:2037194-2037280 (+)
A/J	ENSMUSG00195024062	lncRNA gene	Chr17:2029409-2029493 (+)
AKR/J	ENSMUSG00220029415	lncRNA gene	Chr17:2224452-2224536 (+)
BALB/cJ	ENSMUSG00180027839	lncRNA gene	Chr17:2041216-2041300 (+)
C3H/HeJ	ENSMUSG00175036186	lncRNA gene	Chr17:2001270-2001354 (+)
C57BL/6NJ	ENSMUSG00215029316	lncRNA gene	Chr17:2022078-2022162 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022625	lncRNA gene	Chr17:2066518-2066566 (+)
CBA/J	ENSMUSG00210039733	lncRNA gene	Chr17:2018195-2018279 (+)
DBA/2J	ENSMUSG00185024160	lncRNA gene	Chr17:2121418-2121502 (+)
FVB/NJ	ENSMUSG00205009605	lncRNA gene	Chr17:2078305-2078389 (+)
JF1/MsJ	ENSUMUG00000036933	lncRNA gene	Chr17:2102160-2102243 (+)
LP/J	ENSMUSG00230035280	lncRNA gene	Chr17:3218622-3218706 (+)
NOD/ShiLtJ	ENSMUSG00190039075	lncRNA gene	Chr17:2008867-2008950 (+)
NZO/HlLtJ	ENSMUSG00225029168	lncRNA gene	Chr17:5522601-5522685 (+)
PWK/PhJ	ENSLUMG00010019388	lncRNA gene	Chr17:2127016-2127099 (+)
SPRET/EiJ	ENSMSPG00010040811	lncRNA gene	Chr17:2052776-2052860 (+)
WSB/EiJ	ENSIUOG00005014454	lncRNA gene	Chr17:2070976-2071062 (+)

Homology

• Gene Tree
  Gm56914
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121180 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121180	Ensembl Gene Model | MGI Sequence Detail	224	C57BL/6J
transcript	ENSMUST00000247398	Ensembl | MGI Sequence Detail	224	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56914:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142391	Chr17:5140171-5140176 (+)	141 bp