Gm56913 Gene Detail

Summary

• Symbol
  Gm56913
• Name
  predicted gene, 56913

• Feature Type
  lncRNA gene
• IDs
  MGI:7337739
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr17:66770475-66791042 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  924 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337739	lncRNA gene	Chr17:66770475-66791042 (-)
129S1/SvImJ	ENSMUSG00200039340	lncRNA gene	Chr17:62131133-62131765 (-)
A/J	ENSMUSG00195019422	lncRNA gene	Chr17:63473428-63474060 (-)
AKR/J	ENSMUSG00220018503	lncRNA gene	Chr17:62553753-62554385 (-)
BALB/cJ	ENSMUSG00180020451	lncRNA gene	Chr17:63210743-63211375 (-)
C3H/HeJ	ENSMUSG00175030513	lncRNA gene	Chr17:62518260-62518892 (-)
C57BL/6NJ	ENSMUSG00215034140	lncRNA gene	Chr17:62178639-62179271 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026906	lncRNA gene	Chr17:63135012-63135667 (-)
CBA/J	ENSMUSG00210030475	lncRNA gene	Chr17:62318183-62318815 (-)
DBA/2J	ENSMUSG00185022998	lncRNA gene	Chr17:65162662-65163294 (-)
FVB/NJ	ENSMUSG00205017760	lncRNA gene	Chr17:62937251-62937883 (-)
JF1/MsJ	ENSUMUG00000039850	lncRNA gene	Chr17:64816602-64817257 (-)
LP/J	ENSMUSG00230016962	lncRNA gene	Chr17:66149376-66150008 (-)
NOD/ShiLtJ	ENSMUSG00190041865	lncRNA gene	Chr17:62297108-62297740 (-)
NZO/HlLtJ	ENSMUSG00225026107	lncRNA gene	Chr17:68426105-68426737 (-)
PWK/PhJ	ENSLUMG00010031165	lncRNA gene	Chr17:62105426-62106082 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005032032	lncRNA gene	Chr17:63161930-63162632 (-)

Homology

• Gene Tree
  Gm56913
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121174 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121174	Ensembl Gene Model | MGI Sequence Detail	20568	C57BL/6J
transcript	ENSMUST00000247384	Ensembl | MGI Sequence Detail	633	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56913:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149130	Chr17:66791035-66791047 (-)	1 bp
Tssr149129	Chr17:66790860-66790871 (-)	176 bp
Tssr149128	Chr17:66790829-66790835 (-)	210 bp
Tssr149127	Chr17:66788469-66788482 (-)	2,566 bp
Tssr149126	Chr17:66786383-66786402 (-)	4,649 bp