Gm56912 Gene Detail

Summary

• Symbol
  Gm56912
• Name
  predicted gene, 56912

• Feature Type
  lncRNA gene
• IDs
  MGI:7337737
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:56916752-56917964 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337737	lncRNA gene	Chr17:56916752-56917964 (+)
129S1/SvImJ	ENSMUSG00200017025	lncRNA gene	Chr17:52192387-52193478 (+)
A/J	ENSMUSG00195007073	lncRNA gene	Chr17:53580209-53581298 (+)
AKR/J	ENSMUSG00220013410	lncRNA gene	Chr17:52629559-52630648 (+)
BALB/cJ	ENSMUSG00180006280	lncRNA gene	Chr17:53337850-53338939 (+)
C3H/HeJ	ENSMUSG00175007530	lncRNA gene	Chr17:52653860-52654949 (+)
C57BL/6NJ	ENSMUSG00215010144	lncRNA gene	Chr17:52268021-52269110 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019179	lncRNA gene	Chr17:53384962-53386050 (+)
CBA/J	ENSMUSG00210028909	lncRNA gene	Chr17:52420948-52422037 (+)
DBA/2J	ENSMUSG00185009190	lncRNA gene	Chr17:55290791-55291880 (+)
FVB/NJ	ENSMUSG00205007441	lncRNA gene	Chr17:52968091-52969182 (+)
JF1/MsJ	ENSUMUG00000035485	lncRNA gene	Chr17:54978348-54979438 (+)
LP/J	ENSMUSG00230028684	lncRNA gene	Chr17:56269762-56270853 (+)
NOD/ShiLtJ	ENSMUSG00190010732	lncRNA gene	Chr17:52423309-52424400 (+)
NZO/HlLtJ	ENSMUSG00225043149	lncRNA gene	Chr17:58553992-58555081 (+)
PWK/PhJ	ENSLUMG00010009888	lncRNA gene	Chr17:52229204-52230294 (+)
SPRET/EiJ	ENSMSPG00010006129	lncRNA gene	Chr17:52544333-52545425 (+)
WSB/EiJ	ENSIUOG00005024131	lncRNA gene	Chr17:53329154-53330245 (+)

Homology

• Gene Tree
  Gm56912
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120175 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120175	Ensembl Gene Model | MGI Sequence Detail	1213	C57BL/6J
transcript	ENSMUST00000241741	Ensembl | MGI Sequence Detail	1213	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56912:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145313	Chr17:56916885-56916916 (+)	149 bp