Gm56909 Gene Detail

Summary

• Symbol
  Gm56909
• Name
  predicted gene, 56909

• Feature Type
  lncRNA gene
• IDs
  MGI:7337731
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:36174665-36176598 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337731	lncRNA gene	Chr17:36174665-36176598 (-)
129S1/SvImJ	ENSMUSG00200051900	lncRNA gene	Chr17:31799818-31801751 (-)
A/J	ENSMUSG00195048845	lncRNA gene	Chr17:32861936-32863869 (-)
AKR/J	ENSMUSG00220052326	lncRNA gene	Chr17:31663187-31665120 (-)
BALB/cJ	ENSMUSG00180044998	lncRNA gene	Chr17:32231728-32233661 (-)
C3H/HeJ	ENSMUSG00175043428	lncRNA gene	Chr17:31549028-31550961 (-)
C57BL/6NJ	ENSMUSG00215053147	lncRNA gene	Chr17:31625229-31627162 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052150	lncRNA gene	Chr17:32691442-32693375 (-)
CBA/J	ENSMUSG00210052140	lncRNA gene	Chr17:31371086-31373019 (-)
DBA/2J	ENSMUSG00185055876	lncRNA gene	Chr17:34250879-34252812 (-)
FVB/NJ	ENSMUSG00205053446	lncRNA gene	Chr17:31918136-31920069 (-)
JF1/MsJ	ENSUMUG00000057857	lncRNA gene	Chr17:33208823-33210755 (-)
LP/J	ENSMUSG00230054692	lncRNA gene	Chr17:35288495-35290428 (-)
NOD/ShiLtJ	ENSMUSG00190053796	lncRNA gene	Chr17:31537253-31539186 (-)
NZO/HlLtJ	ENSMUSG00225055010	lncRNA gene	Chr17:37365207-37367140 (-)
PWK/PhJ	ENSLUMG00010044079	lncRNA gene	Chr17:31171861-31173794 (-)
SPRET/EiJ	ENSMSPG00010050101	lncRNA gene	Chr17:32387481-32389412 (-)
WSB/EiJ	ENSIUOG00005051586	lncRNA gene	Chr17:32354256-32356189 (-)

Homology

• Gene Tree
  Gm56909
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121151 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121151	Ensembl Gene Model | MGI Sequence Detail	1934	C57BL/6J
transcript	ENSMUST00000247317	Ensembl | MGI Sequence Detail	1934	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56909:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147911	Chr17:36176596-36176599 (-)	0 bp