Gm56908 Gene Detail

Summary

• Symbol
  Gm56908
• Name
  predicted gene, 56908

• Feature Type
  lncRNA gene
• IDs
  MGI:7337729
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:30065517-30072909 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  377 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337729	lncRNA gene	Chr17:30065517-30072909 (+)
129S1/SvImJ	ENSMUSG00200054202	lncRNA gene	Chr17:25720939-25728000 (+)
A/J	ENSMUSG00195054621	lncRNA gene	Chr17:26547909-26554974 (+)
AKR/J	ENSMUSG00220053988	lncRNA gene	Chr17:25590003-25597067 (+)
BALB/cJ	ENSMUSG00180051168	lncRNA gene	Chr17:26023522-26030584 (+)
C3H/HeJ	ENSMUSG00175053899	lncRNA gene	Chr17:25578205-25585268 (+)
C57BL/6NJ	ENSMUSG00215054597	lncRNA gene	Chr17:25581690-25588743 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050458	lncRNA gene	Chr17:26313279-26320333 (+)
CBA/J	ENSMUSG00210051208	lncRNA gene	Chr17:25416646-25423709 (+)
DBA/2J	ENSMUSG00185054304	lncRNA gene	Chr17:27627103-27634167 (+)
FVB/NJ	ENSMUSG00205053690	lncRNA gene	Chr17:25895070-25902124 (+)
JF1/MsJ	ENSUMUG00000057913	lncRNA gene	Chr17:27102194-27109258 (+)
LP/J	ENSMUSG00230055236	lncRNA gene	Chr17:29146662-29153722 (+)
NOD/ShiLtJ	ENSMUSG00190054363	lncRNA gene	Chr17:25532680-25539713 (+)
NZO/HlLtJ	ENSMUSG00225055066	lncRNA gene	Chr17:31125552-31132619 (+)
PWK/PhJ	ENSLUMG00010053630	lncRNA gene	Chr17:25011187-25018218 (+)
SPRET/EiJ	ENSMSPG00010051087	lncRNA gene	Chr17:26297375-26304409 (+)
WSB/EiJ	ENSIUOG00005051559	lncRNA gene	Chr17:26300531-26307566 (+)

Homology

• Gene Tree
  Gm56908
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121147 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121147	Ensembl Gene Model | MGI Sequence Detail	7393	C57BL/6J
transcript	ENSMUST00000247302	Ensembl | MGI Sequence Detail	709	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56908:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143596	Chr17:30065504-30065509 (+)	-10 bp
Tssr143597	Chr17:30065521-30065532 (+)	10 bp
Tssr143598	Chr17:30067194-30067197 (+)	1,679 bp