Gm56907 Gene Detail

Summary

• Symbol
  Gm56907
• Name
  predicted gene, 56907

• Feature Type
  lncRNA gene
• IDs
  MGI:7337727
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr17:57385553-57405588 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  578 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337727	lncRNA gene	Chr17:57385553-57405588 (+)
129S1/SvImJ	ENSMUSG00200016985	lncRNA gene	Chr17:52661350-52662155 (+)
A/J	ENSMUSG00195007104	lncRNA gene	Chr17:54048993-54049798 (+)
AKR/J	ENSMUSG00220013785	lncRNA gene	Chr17:53098345-53099150 (+)
BALB/cJ	ENSMUSG00180006204	lncRNA gene	Chr17:53806657-53807462 (+)
C3H/HeJ	ENSMUSG00175007446	lncRNA gene	Chr17:53122626-53123431 (+)
C57BL/6NJ	ENSMUSG00215009424	lncRNA gene	Chr17:52736802-52737607 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019406	lncRNA gene	Chr17:53854425-53855230 (+)
CBA/J	ENSMUSG00210029286	lncRNA gene	Chr17:52889680-52890485 (+)
DBA/2J	ENSMUSG00185009294	lncRNA gene	Chr17:55759526-55760331 (+)
FVB/NJ	ENSMUSG00205007289	lncRNA gene	Chr17:53437044-53437849 (+)
JF1/MsJ	ENSUMUG00000035133	lncRNA gene	Chr17:55446132-55446937 (+)
LP/J	ENSMUSG00230029222	lncRNA gene	Chr17:56738692-56739497 (+)
NOD/ShiLtJ	ENSMUSG00190011625	lncRNA gene	Chr17:52892250-52893055 (+)
NZO/HlLtJ	ENSMUSG00225043460	lncRNA gene	Chr17:59022698-59023503 (+)
PWK/PhJ	ENSLUMG00010009401	lncRNA gene	Chr17:52698868-52699679 (+)
SPRET/EiJ	ENSMSPG00010005839	lncRNA gene	Chr17:53019466-53020269 (+)
WSB/EiJ	ENSIUOG00005023799	lncRNA gene	Chr17:53798031-53798836 (+)

Homology

• Gene Tree
  Gm56907
  

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000119983 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119983	Ensembl Gene Model | MGI Sequence Detail	20036	C57BL/6J
transcript	ENSMUST00000240925	Ensembl | MGI Sequence Detail	828	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56907:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145371	Chr17:57385566-57385609 (+)	35 bp
Tssr5182	Chr17:57387219-57387244 (+)	1,679 bp
Tssr145372	Chr17:57387247-57387285 (+)	1,713 bp
Tssr145373	Chr17:57387594-57387605 (+)	2,047 bp
Tssr145374	Chr17:57387688-57387721 (+)	2,152 bp