Gm56906 Gene Detail

Summary

• Symbol
  Gm56906
• Name
  predicted gene, 56906

• Feature Type
  lncRNA gene
• IDs
  MGI:7337725
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:21695009-21700877 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337725	lncRNA gene	Chr17:21695009-21700877 (+)
129S1/SvImJ	ENSMUSG00200039530	lncRNA gene	Chr17:17242701-17245927 (+)
A/J	ENSMUSG00195039599	lncRNA gene	Chr17:18106987-18110214 (+)
AKR/J	ENSMUSG00220028496	lncRNA gene	Chr17:17314918-17318141 (+)
BALB/cJ	ENSMUSG00180017754	lncRNA gene	Chr17:17397223-17400447 (+)
C3H/HeJ	ENSMUSG00175044944	lncRNA gene	Chr17:17163357-17166580 (+)
C57BL/6NJ	ENSMUSG00215043103	lncRNA gene	Chr17:17187482-17190706 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023259	lncRNA gene	Chr17:17741821-17745071 (+)
CBA/J	ENSMUSG00210043258	lncRNA gene	Chr17:16971283-16974504 (+)
DBA/2J	ENSMUSG00185041558	lncRNA gene	Chr17:19203423-19206647 (+)
FVB/NJ	ENSMUSG00205033859	lncRNA gene	Chr17:17687338-17690559 (+)
JF1/MsJ	ENSUMUG00000041944	lncRNA gene	Chr17:18366022-18369735 (+)
JF1/MsJ	ENSUMUG00000057002	lncRNA gene	Chr19:8948409-8951619 (+)
LP/J	ENSMUSG00230027070	lncRNA gene	Chr17:20601424-20604650 (+)
NOD/ShiLtJ	ENSMUSG00190043327	lncRNA gene	Chr17:17353861-17357082 (+)
NZO/HlLtJ	ENSMUSG00225054726	lncRNA gene	Chr17:22524465-22527691 (+)
PWK/PhJ	ENSLUMG00010021194	lncRNA gene	Chr17:16636149-16639858 (+)
PWK/PhJ	ENSLUMG00010009478	lncRNA gene	Chr19:8352687-8355896 (+)
SPRET/EiJ	ENSMSPG00010042047	lncRNA gene	Chr17:18049250-18049327 (+)
WSB/EiJ	ENSIUOG00005043341	lncRNA gene	Chr17:17943552-17946669 (+)

Homology

• Gene Tree
  Gm56906
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm56906
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000121093 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121093	Ensembl Gene Model | MGI Sequence Detail	5869	C57BL/6J
transcript	ENSMUST00000247106	Ensembl | MGI Sequence Detail	3385	Not Applicable

References

• Summaries
  All 17

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964

TSS for Gm56906:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142879	Chr17:21695169-21695184 (+)	168 bp