Gm56904 Gene Detail

Summary

• Symbol
  Gm56904
• Name
  predicted gene, 56904

• Feature Type
  lncRNA gene
• IDs
  MGI:7337721
• Alliance
  genome feature page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr17:71157595-71183721 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  814 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337721	lncRNA gene	Chr17:71157595-71183721 (+)
129S1/SvImJ	ENSMUSG00200039747	lncRNA gene	Chr17:66486824-66487120 (+)
A/J	ENSMUSG00195019966	lncRNA gene	Chr17:67825005-67825299 (+)
AKR/J	ENSMUSG00220019143	lncRNA gene	Chr17:66872162-66872453 (+)
BALB/cJ	ENSMUSG00180021941	lncRNA gene	Chr17:67561206-67561502 (+)
C3H/HeJ	ENSMUSG00175032483	lncRNA gene	Chr17:66874370-66874664 (+)
C57BL/6NJ	ENSMUSG00215033616	lncRNA gene	Chr17:66575047-66575342 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028040	lncRNA gene	Chr17:67423020-67423306 (+)
CBA/J	ENSMUSG00210031461	lncRNA gene	Chr17:66686417-66686711 (+)
DBA/2J	ENSMUSG00185023398	lncRNA gene	Chr17:69519503-69519797 (+)
FVB/NJ	ENSMUSG00205019625	lncRNA gene	Chr17:67346257-67346563 (+)
JF1/MsJ	ENSUMUG00000041845	lncRNA gene	Chr17:69187090-69187376 (+)
LP/J	ENSMUSG00230016626	lncRNA gene	Chr17:70492189-70492485 (+)
NOD/ShiLtJ	ENSMUSG00190039272	lncRNA gene	Chr17:66635197-66635487 (+)
NZO/HlLtJ	ENSMUSG00225029061	lncRNA gene	Chr17:72771101-72771398 (+)
PWK/PhJ	ENSLUMG00010031498	lncRNA gene	Chr17:66419986-66420273 (+)
SPRET/EiJ	ENSMSPG00010017872	lncRNA gene	Chr17:66790269-66790556 (+)
WSB/EiJ	ENSIUOG00005034123	lncRNA gene	Chr17:67547589-67547881 (+)

Homology

• Gene Tree
  Gm56904
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  95
• Gene trapped
  95
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00000121122 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121122	Ensembl Gene Model | MGI Sequence Detail	26127	C57BL/6J
transcript	ENSMUST00000242145	Ensembl | MGI Sequence Detail	1951	Not Applicable

References

• Summaries
  All 5

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56904:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145684	Chr17:71156455-71156464 (+)	-1,135 bp
Tssr145685	Chr17:71157152-71157182 (+)	-428 bp
Tssr145686	Chr17:71157690-71157715 (+)	108 bp
Tssr145687	Chr17:71158331-71158359 (+)	750 bp
Tssr145688	Chr17:71159010-71159018 (+)	1,419 bp
Tssr145696	Chr17:71165584-71165594 (+)	7,994 bp
Tssr145697	Chr17:71172109-71172110 (+)	14,515 bp
Tssr145698	Chr17:71172686-71172703 (+)	15,100 bp
Tssr145699	Chr17:71177741-71177755 (+)	20,153 bp
Tssr145700	Chr17:71178923-71178925 (+)	21,329 bp
Tssr145701	Chr17:71180502-71180549 (+)	22,931 bp