Gm56902 Gene Detail

Summary

• Symbol
  Gm56902
• Name
  predicted gene, 56902

• Feature Type
  lncRNA gene
• IDs
  MGI:7337717
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:84154040-84158591 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  346 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337717	lncRNA gene	Chr17:84154040-84158591 (+)
129S1/SvImJ	ENSMUSG00200024917	lncRNA gene	Chr17:79544647-79545176 (+)
A/J	ENSMUSG00195029895	lncRNA gene	Chr17:80918054-80918583 (+)
AKR/J	ENSMUSG00220013769	lncRNA gene	Chr17:79875572-79876100 (+)
BALB/cJ	ENSMUSG00180028116	lncRNA gene	Chr17:80597612-80598141 (+)
C3H/HeJ	ENSMUSG00175016497	lncRNA gene	Chr17:79856526-79857055 (+)
C57BL/6NJ	ENSMUSG00215016675	lncRNA gene	Chr17:79591095-79591624 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015475	lncRNA gene	Chr17:80392883-80393412 (+)
CBA/J	ENSMUSG00210020910	lncRNA gene	Chr17:79715251-79715780 (+)
DBA/2J	ENSMUSG00185020903	lncRNA gene	Chr17:82542610-82543159 (+)
FVB/NJ	ENSMUSG00205032952	lncRNA gene	Chr17:80360945-80361474 (+)
JF1/MsJ	ENSUMUG00000015457	lncRNA gene	Chr17:82275915-82276464 (+)
LP/J	ENSMUSG00230010436	lncRNA gene	Chr17:83563168-83563697 (+)
NOD/ShiLtJ	ENSMUSG00190010432	lncRNA gene	Chr17:79628621-79629150 (+)
NZO/HlLtJ	ENSMUSG00225031763	lncRNA gene	Chr17:85824225-85824754 (+)
PWK/PhJ	ENSLUMG00010005768	lncRNA gene	Chr17:79477931-79478480 (+)
SPRET/EiJ	ENSMSPG00010008735	lncRNA gene	Chr17:80033599-80034138 (+)
WSB/EiJ	ENSIUOG00005010812	lncRNA gene	Chr17:80544420-80544949 (+)

Homology

• Gene Tree
  Gm56902
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121087 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121087	Ensembl Gene Model | MGI Sequence Detail	4552	C57BL/6J
transcript	ENSMUST00000276577	Ensembl | MGI Sequence Detail	1147	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56902:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146011	Chr17:84154034-84154056 (+)	5 bp
Tssr146012	Chr17:84154058-84154073 (+)	26 bp
Tssr146013	Chr17:84155450-84155485 (+)	1,428 bp