Gm56899 Gene Detail

Summary

• Symbol
  Gm56899
• Name
  predicted gene, 56899

• Feature Type
  lncRNA gene
• IDs
  MGI:7337711
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:35266090-35266726 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337711	lncRNA gene	Chr17:35266090-35266726 (-)
129S1/SvImJ	ENSMUSG00200051363	lncRNA gene	Chr17:30970201-30970824 (-)
A/J	ENSMUSG00195048002	lncRNA gene	Chr17:31870203-31870827 (-)
AKR/J	ENSMUSG00220052640	lncRNA gene	Chr17:30899102-30899731 (-)
BALB/cJ	ENSMUSG00180046696	lncRNA gene	Chr17:31240072-31240696 (-)
C3H/HeJ	ENSMUSG00175043337	lncRNA gene	Chr17:30785212-30785841 (-)
C57BL/6NJ	ENSMUSG00215053710	lncRNA gene	Chr17:30810415-30811038 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052000	lncRNA gene	Chr17:31827908-31828529 (-)
CBA/J	ENSMUSG00210052732	lncRNA gene	Chr17:30607310-30607939 (-)
DBA/2J	ENSMUSG00185054573	lncRNA gene	Chr17:33259319-33259943 (-)
FVB/NJ	ENSMUSG00205053856	lncRNA gene	Chr17:31127733-31128362 (-)
JF1/MsJ	ENSUMUG00000057259	lncRNA gene	Chr17:32511711-32512346 (-)
LP/J	ENSMUSG00230054716	lncRNA gene	Chr17:34368452-34369075 (-)
NOD/ShiLtJ	ENSMUSG00190053309	lncRNA gene	Chr17:30729002-30729625 (-)
NZO/HlLtJ	ENSMUSG00225055025	lncRNA gene	Chr17:36380716-36381351 (-)
PWK/PhJ	ENSLUMG00010046010	lncRNA gene	Chr17:30346903-30347532 (-)
SPRET/EiJ	ENSMSPG00010050574	lncRNA gene	Chr17:31530961-31531596 (-)
WSB/EiJ	ENSIUOG00005051553	lncRNA gene	Chr17:31456249-31456878 (-)

Homology

• Gene Tree
  Gm56899
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120973 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120973	Ensembl Gene Model | MGI Sequence Detail	637	C57BL/6J
transcript	ENSMUST00000246721	Ensembl | MGI Sequence Detail	637	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56899:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147731	Chr17:35266715-35266719 (-)	9 bp