Gm56898 Gene Detail

Summary

• Symbol
  Gm56898
• Name
  predicted gene, 56898

• Feature Type
  lncRNA gene
• IDs
  MGI:7337709
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:5449663-5456960 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  290 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337709	lncRNA gene	Chr17:5449663-5456960 (-)
129S1/SvImJ	ENSMUSG00200034315	lncRNA gene	Chr17:2351593-2352641 (-)
A/J	ENSMUSG00195024059	lncRNA gene	Chr17:2345526-2346574 (-)
AKR/J	ENSMUSG00220029377	lncRNA gene	Chr17:2540977-2542025 (-)
BALB/cJ	ENSMUSG00180027819	lncRNA gene	Chr17:2357315-2358363 (-)
C3H/HeJ	ENSMUSG00175036171	lncRNA gene	Chr17:2317321-2318369 (-)
C57BL/6NJ	ENSMUSG00215029274	lncRNA gene	Chr17:2338174-2339222 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022593	lncRNA gene	Chr17:2380207-2381254 (-)
CBA/J	ENSMUSG00210039719	lncRNA gene	Chr17:2334279-2335327 (-)
DBA/2J	ENSMUSG00185024153	lncRNA gene	Chr17:2437500-2438548 (-)
FVB/NJ	ENSMUSG00205009598	lncRNA gene	Chr17:2392395-2393443 (-)
JF1/MsJ	ENSUMUG00000036901	lncRNA gene	Chr17:2417358-2418390 (-)
LP/J	ENSMUSG00230035160	lncRNA gene	Chr17:3534709-3535757 (-)
NOD/ShiLtJ	ENSMUSG00190039215	lncRNA gene	Chr17:2323022-2324041 (-)
NZO/HlLtJ	ENSMUSG00225029145	lncRNA gene	Chr17:5838692-5839740 (-)
PWK/PhJ	ENSLUMG00010019404	lncRNA gene	Chr17:2440059-2441078 (-)
SPRET/EiJ	ENSMSPG00010040783	lncRNA gene	Chr17:2365167-2366208 (-)
WSB/EiJ	ENSIUOG00005014448	lncRNA gene	Chr17:2385843-2386891 (-)

Homology

• Gene Tree
  Gm56898
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120934 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120934	Ensembl Gene Model | MGI Sequence Detail	7298	C57BL/6J
transcript	ENSMUST00000246556	Ensembl | MGI Sequence Detail	679	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56898:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146299	Chr17:5456907-5456939 (-)	37 bp