Gm56897 Gene Detail

Summary

• Symbol
  Gm56897
• Name
  predicted gene, 56897

• Feature Type
  lncRNA gene
• IDs
  MGI:7337707
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:27191217-27192191 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  45 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337707	lncRNA gene	Chr17:27191217-27192191 (-)
129S1/SvImJ	ENSMUSG00200053891	lncRNA gene	Chr17:22637279-22637934 (-)
A/J	ENSMUSG00195054376	lncRNA gene	Chr17:23658028-23658683 (-)
AKR/J	ENSMUSG00220054011	lncRNA gene	Chr17:22705251-22705906 (-)
BALB/cJ	ENSMUSG00180051341	lncRNA gene	Chr17:22935431-22936086 (-)
C3H/HeJ	ENSMUSG00175054016	lncRNA gene	Chr17:22693923-22694578 (-)
C57BL/6NJ	ENSMUSG00215054250	lncRNA gene	Chr17:22701847-22702502 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050870	lncRNA gene	Chr17:23302601-23303256 (-)
CBA/J	ENSMUSG00210050858	lncRNA gene	Chr17:22532733-22533388 (-)
DBA/2J	ENSMUSG00185054237	lncRNA gene	Chr17:24746199-24746854 (-)
FVB/NJ	ENSMUSG00205053819	lncRNA gene	Chr17:23008609-23009264 (-)
JF1/MsJ	ENSUMUG00000057482	lncRNA gene	Chr17:24206139-24206794 (-)
LP/J	ENSMUSG00230055079	lncRNA gene	Chr17:26141766-26142421 (-)
NOD/ShiLtJ	ENSMUSG00190054376	lncRNA gene	Chr17:22638821-22639476 (-)
NZO/HlLtJ	ENSMUSG00225054392	lncRNA gene	Chr17:28071742-28072397 (-)
PWK/PhJ	ENSLUMG00010053498	lncRNA gene	Chr17:22118964-22119619 (-)
SPRET/EiJ	ENSMSPG00010049988	lncRNA gene	Chr17:23448255-23448907 (-)
WSB/EiJ	ENSIUOG00005051687	lncRNA gene	Chr17:23397139-23397794 (-)

Homology

• Gene Tree
  Gm56897
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120301 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120301	Ensembl Gene Model | MGI Sequence Detail	975	C57BL/6J
transcript	ENSMUST00000242416	Ensembl | MGI Sequence Detail	800	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56897:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146986	Chr17:27192001-27192026 (-)	177 bp