Gm56896 Gene Detail

Summary

• Symbol
  Gm56896
• Name
  predicted gene, 56896

• Feature Type
  lncRNA gene
• IDs
  MGI:7337705
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:34523961-34524502 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337705	lncRNA gene	Chr17:34523961-34524502 (+)
129S1/SvImJ	ENSMUSG00200051366	lncRNA gene	Chr17:30227107-30227391 (+)
A/J	ENSMUSG00195046619	lncRNA gene	Chr17:31093355-31093639 (+)
AKR/J	ENSMUSG00220053747	lncRNA gene	Chr17:30120988-30121272 (+)
BALB/cJ	ENSMUSG00180046466	lncRNA gene	Chr17:30477426-30477710 (+)
C3H/HeJ	ENSMUSG00175053834	lncRNA gene	Chr17:30007138-30007422 (+)
C57BL/6NJ	ENSMUSG00215054544	lncRNA gene	Chr17:30067288-30067572 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051590	lncRNA gene	Chr17:31049602-31049886 (+)
CBA/J	ENSMUSG00210051246	lncRNA gene	Chr17:29829251-29829535 (+)
DBA/2J	ENSMUSG00185054289	lncRNA gene	Chr17:32496705-32496989 (+)
FVB/NJ	ENSMUSG00205053363	lncRNA gene	Chr17:30343621-30343905 (+)
JF1/MsJ	ENSUMUG00000057967	lncRNA gene	Chr17:31764072-31764356 (+)
LP/J	ENSMUSG00230054767	lncRNA gene	Chr17:33625428-33625712 (+)
NOD/ShiLtJ	ENSMUSG00190054347	lncRNA gene	Chr17:29974982-29975266 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010053467	lncRNA gene	Chr17:29612449-29612733 (+)
SPRET/EiJ	ENSMSPG00010051354	lncRNA gene	Chr17:30753572-30753856 (+)
WSB/EiJ	ENSIUOG00005052284	lncRNA gene	Chr17:30680512-30680796 (+)

Homology

• Gene Tree
  Gm56896
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000120925 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120925	Ensembl Gene Model | MGI Sequence Detail	542	C57BL/6J
transcript	ENSMUST00000246517	Ensembl | MGI Sequence Detail	542	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56896:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144001	Chr17:34523983-34523988 (+)	25 bp
Tssr144002	Chr17:34524015-34524036 (+)	65 bp
Tssr144003	Chr17:34524042-34524049 (+)	85 bp