Gm56894 Gene Detail

Summary

• Symbol
  Gm56894
• Name
  predicted gene, 56894

• Feature Type
  lncRNA gene
• IDs
  MGI:7337701
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:29707620-29709489 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337701	lncRNA gene	Chr17:29707620-29709489 (-)
129S1/SvImJ	ENSMUSG00200054370	lncRNA gene	Chr17:25362474-25363926 (-)
A/J	ENSMUSG00195054480	lncRNA gene	Chr17:26178969-26180421 (-)
AKR/J	ENSMUSG00220053610	lncRNA gene	Chr17:25226646-25228098 (-)
BALB/cJ	ENSMUSG00180051629	lncRNA gene	Chr17:25665002-25666454 (-)
C3H/HeJ	ENSMUSG00175053806	lncRNA gene	Chr17:25214889-25216341 (-)
C57BL/6NJ	ENSMUSG00215054289	lncRNA gene	Chr17:25224437-25225889 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051578	lncRNA gene	Chr17:25947415-25948867 (-)
CBA/J	ENSMUSG00210051153	lncRNA gene	Chr17:25053342-25054794 (-)
DBA/2J	ENSMUSG00185055464	lncRNA gene	Chr17:27268611-27270063 (-)
FVB/NJ	ENSMUSG00205053492	lncRNA gene	Chr17:25537383-25538835 (-)
JF1/MsJ	ENSUMUG00000057600	lncRNA gene	Chr17:26736512-26737964 (-)
LP/J	ENSMUSG00230055232	lncRNA gene	Chr17:28788222-28789674 (-)
NOD/ShiLtJ	ENSMUSG00190054199	lncRNA gene	Chr17:25173887-25175339 (-)
NZO/HlLtJ	ENSMUSG00225055061	lncRNA gene	Chr17:30766828-30768280 (-)
PWK/PhJ	ENSLUMG00010053645	lncRNA gene	Chr17:24652790-24654242 (-)
SPRET/EiJ	ENSMSPG00010050879	lncRNA gene	Chr17:25942753-25944203 (-)
WSB/EiJ	ENSIUOG00005051336	lncRNA gene	Chr17:25933600-25935052 (-)

Homology

• Gene Tree
  Gm56894
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120260 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120260	Ensembl Gene Model | MGI Sequence Detail	1870	C57BL/6J
transcript	ENSMUST00000242134	Ensembl | MGI Sequence Detail	1870	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56894:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147226	Chr17:29709258-29709284 (-)	218 bp
Tssr147225	Chr17:29708047-29708059 (-)	1,436 bp