Gm56893 Gene Detail

Summary

• Symbol
  Gm56893
• Name
  predicted gene, 56893

• Feature Type
  lncRNA gene
• IDs
  MGI:7337699
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:87012401-87021193 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  502 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337699	lncRNA gene	Chr17:87012401-87021193 (-)
129S1/SvImJ	ENSMUSG00200023207	lncRNA gene	Chr17:82417816-82423410 (-)
A/J	ENSMUSG00195029594	lncRNA gene	Chr17:83797338-83802910 (-)
AKR/J	ENSMUSG00220016615	lncRNA gene	Chr17:82748722-82754381 (-)
BALB/cJ	ENSMUSG00180026348	lncRNA gene	Chr17:83469543-83475117 (-)
C3H/HeJ	ENSMUSG00175007210	lncRNA gene	Chr17:82735403-82740975 (-)
C57BL/6NJ	ENSMUSG00215024003	lncRNA gene	Chr17:82455927-82461521 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011883	lncRNA gene	Chr17:83291606-83297310 (-)
CBA/J	ENSMUSG00210022311	lncRNA gene	Chr17:82594107-82599679 (-)
DBA/2J	ENSMUSG00185020616	lncRNA gene	Chr17:85413604-85419176 (-)
FVB/NJ	ENSMUSG00205006062	lncRNA gene	Chr17:83222829-83228487 (-)
JF1/MsJ	ENSUMUG00000016454	lncRNA gene	Chr17:85150005-85155653 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190010066	lncRNA gene	Chr17:82491759-82497351 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010032264	lncRNA gene	Chr17:82358638-82364210 (-)
SPRET/EiJ	ENSMSPG00010020541	lncRNA gene	Chr17:82949173-82954768 (-)
WSB/EiJ	ENSIUOG00005022771	lncRNA gene	Chr17:83414913-83420595 (-)

Homology

• Gene Tree
  Gm56893
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120725 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120725	Ensembl Gene Model | MGI Sequence Detail	8793	C57BL/6J
transcript	ENSMUST00000245427	Ensembl | MGI Sequence Detail	1716	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56893:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149739	Chr17:87017972-87018022 (-)	3,196 bp
Tssr149738	Chr17:87017901-87017935 (-)	3,275 bp